RNA id: TCONS_00063920



Basic Information


Item Value
RNA id TCONS_00063920
length 539
lncRNA type retained_intron
GC content 0.43
exon number 6
gene id XLOC_032897
representative False

Chromosome Information


Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 28970513 ~ 28980829 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CTAAGGCGCATAATAAAAACTAGCCATCATGCAGGTGTAGAAAGTACCATcctcaaaaacataaaaaatcaaGTGGAACAAACCAGAAAGTCAGTCTACCAAGATGGCTGGTTTGAGGGGACTCGGCTTATCTCACTGCTCAGAGACACTATCTGTCTCCCACAGGGCCACGAAACTGACTTGCTACATGGAATGGACAGggtCATGGAGTCTCTAAATCTTCTGCGGTATTTACTGATACAGAAAAGAGGAATTTCTACTGGAGAGTGGACAGACCTGTGCCATATTGCTGAGACGTACACAAAATTACTACGTGTTTGTCTAAGCATGTCAAAATCATACTATGGAACTGAGTTAAAAAGACTTCGAGAAAACAAAAAGATTAAGGCTAAAGAATTCAAAGAGGCATCTGGAAAGAGATCAGTTCAGAGCTTGATTGTGAAAACGGAGACGCTTGGTAGCATGCCACCTGAGGCACAGGATAAGGTCTTGCAGTGCGCCCTGGTCACATGTGACTTAATGGAAAGTCTTGTAGTCCG

Function


GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005737 cytoplasm cellular_component
GO:0055105 ubiquitin-protein transferase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080723-14 Predicted to enable ubiquitin-protein transferase inhibitor activity. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in arteriovenous malformation and glomus tumor. Orthologous to human GLMN (glomulin, FKBP associated protein).

Ensembl:

ensembl_id ENSDART00000148925

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00065163 lncRNA downstream 840440 28124381 ~ 28130130 (-) True XLOC_032892
TCONS_00063913 lncRNA downstream 1015969 27938489 ~ 27954601 (-) True XLOC_032890
TCONS_00065162 lncRNA downstream 1347049 27620675 ~ 27623521 (-) True XLOC_032887
TCONS_00063910 lncRNA downstream 1347271 27620675 ~ 27623299 (-) False XLOC_032887
TCONS_00063909 lncRNA downstream 1347287 27620675 ~ 27623283 (-) False XLOC_032887
TCONS_00063921 lncRNA upstream 3137 28975158 ~ 28980829 (-) True XLOC_032897
TCONS_00065164 lncRNA upstream 11996 28984017 ~ 28986397 (-) True XLOC_032898
TCONS_00063929 lncRNA upstream 72618 29044639 ~ 29045293 (-) False XLOC_032900
TCONS_00063935 lncRNA upstream 183893 29155914 ~ 29159888 (-) True XLOC_032902
TCONS_00063941 lncRNA upstream 363137 29335158 ~ 29335942 (-) True XLOC_032906
TCONS_00063918 mRNA downstream 8910 28946041 ~ 28961660 (-) True XLOC_032896
TCONS_00063917 mRNA downstream 27514 28914233 ~ 28943056 (-) True XLOC_032895
TCONS_00063916 mRNA downstream 625568 28339662 ~ 28345002 (-) True XLOC_032894
TCONS_00063915 mRNA downstream 747978 28216487 ~ 28222592 (-) True XLOC_032893
TCONS_00063914 mRNA downstream 852575 28115383 ~ 28117995 (-) True XLOC_032891
TCONS_00063922 mRNA upstream 32041 29004062 ~ 29007493 (-) True XLOC_032899
TCONS_00063924 mRNA upstream 39890 29011911 ~ 29086473 (-) False XLOC_032900
TCONS_00063925 mRNA upstream 45503 29017524 ~ 29049022 (-) False XLOC_032900
TCONS_00063927 mRNA upstream 47744 29019765 ~ 29051788 (-) False XLOC_032900
TCONS_00063926 mRNA upstream 47744 29019765 ~ 29051788 (-) False XLOC_032900
TCONS_00063903 other downstream 1914707 27051342 ~ 27055863 (-) True XLOC_032882
TCONS_00063901 other downstream 1921588 27041747 ~ 27048982 (-) False XLOC_032882
TCONS_00063885 other downstream 3781787 25188023 ~ 25188783 (-) True XLOC_032870
TCONS_00063877 other downstream 4128284 24842170 ~ 24842286 (-) True XLOC_032865
TCONS_00063876 other downstream 4184627 24785827 ~ 24785943 (-) True XLOC_032864
TCONS_00063923 other upstream 39890 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063930 other upstream 72976 29044997 ~ 29052872 (-) False XLOC_032900
TCONS_00063931 other upstream 89629 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063938 other upstream 286217 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063952 other upstream 1230900 30202921 ~ 30203037 (-) True XLOC_032918

Expression Profile


//