RNA id: TCONS_00065164


Basic Information

Item Value
RNA id TCONS_00065164
length 2381
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id XLOC_032898
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 28984017 ~ 28986397 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tggttttttaacccaaatgctgggttgagactgctgggtaacaaaattgggttgattcaacccaatttgggttgaaaaTCGATCTTTATCTATAACCCAGCAGTGCTGGGTTGGGAACGCGGACGTGAAAGAGAGCACGCACGTCACGTCAACATGCAGGGACATCAACGTGAGAAACCGCCATTTTCTTTGCGCTGTCTTTGAGGGGAAGCGAGTGAAATTCTGTGTGAGACGTAAGTTATTTAGTGTGTTTTTAACAATTTTCATAAGAAATAACACACTTAGTTTACTTAGTATAATATACAcgcgcttttttttctgtttctccgcCTGATGGCCGACTTGTTGCTCCGCCTCACGCTGACCTGTGCTCGCCTTATGGCTGAACTGTTGCTCCGAGTCCGCCTGACGAGCCACCTGTTTCTCCGGatctgtttctccgcctaacggcgacgtgtttctccggacctgtttctccgcctaacggcgacctgtttctccggacctgtttctccgcctaacgcCCGAGCTGTTGCTCCGCCTAACTCCTGACCTGTGCTCGCCTCACGCCCGACATGTTGCTCCACCTCACGCCCAGCCTGTTGATCGGTGGACGGGTAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGGTAACTAATGAAACTAACGTGAAGCATGTTTGATGAccactttataaacacaacacctaggataatttaggagctttttattgtaataaaataccttttgaatgacacagatttttatgttggctaggtgatgacagtaagtaacgttactgtgatttgtgatctttctggggtgttaactgtaaagcagtaagtagtatttttactattgtatttcttaagtttgttcatggatttttgtgacaatactttgatgcataagtgttgaattcagcttctaacaatgttttttttttatcaaaatatatacaataattgtcctgctctgcatgtacattttgtttagctgtacatctgtacattgaatagcaaatgttattaatttactatgagcattttacattctagACGTGATTTGAGCTATCTTTAATTAATCCTGTATGTAAGGGTCGTTTCATGCTAACGGAAATGTCTGAGCTAAGACTAATTCCAACCTAATCATCTtcgactgcaaaaagaaaaagtttgaccACCGTTTTATGTGACACCCtggataattattatcatttaggagtatttttgtgatatagtgacttttggctaacatgatctttttttacttaattttgcttaaacgcttttatctgttattctttttcagatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaaggtatgtaataatattttacttggttcattgtaatcattagggctgcccttgtctaaacatttgtctggttgacttgtgatgttcatttgaagcattagttgaataattacagatttattaataaaccatttattcattaattcattttctttttgactcagtccctttattaatctggggtcgccacagcggaatgaaccgccaacttatccagcatattttttacacagcggattcatgcagcatacattgactttgccagtgtggactttttttctgcaactagtgggtagcacattcgcctcatagcaacaaggtcacttgatcgatccttggctgggtcaataggcctttctgtgtggagtttgcatgttctccccgtgttcgcgtgggtttcctccaggtgccccggtttccaaagacgtggtaaaggtgaattaagtagactaaattgtcaatggtgtatgtgtgtgaatgagtatttgtttcccagtgatgggttgcagctgaaagggcattcgctgcataaaacttatgctggatatgttggtggttcattccattgtggttaccccagattaataaagcgacaaagctaaaaagaaaatgaatgaatgaatgaataataaatttttagttgactaatggttattcaattattagggggcagccctagtaatcattagccacttcaacactttaaactgagagattgaactctaatgccaatttgtttttgtctggttattttttaaaatctgctgttcatgcaaccagtgacattctcttgttttatttttagcacagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGGTAAGGATTCAATTAAAGGTTTCTCAATGcataatgatgcatttaatgcataatgattgtcttagttattttattaacaatcaaaatgttatttttatgtttgttattagggtggcatgggggcgcagtgggtagtgctg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063921 lncRNA downstream 3188 28975158 ~ 28980829 (-) True XLOC_032897
TCONS_00063920 lncRNA downstream 11996 28970570 ~ 28972021 (-) False XLOC_032897
TCONS_00065163 lncRNA downstream 853887 28124381 ~ 28130130 (-) True XLOC_032892
TCONS_00063913 lncRNA downstream 1029416 27938489 ~ 27954601 (-) True XLOC_032890
TCONS_00065162 lncRNA downstream 1360496 27620675 ~ 27623521 (-) True XLOC_032887
TCONS_00063929 lncRNA upstream 58242 29044639 ~ 29045293 (-) False XLOC_032900
TCONS_00063935 lncRNA upstream 169517 29155914 ~ 29159888 (-) True XLOC_032902
TCONS_00063941 lncRNA upstream 348761 29335158 ~ 29335942 (-) True XLOC_032906
TCONS_00065165 lncRNA upstream 423829 29410226 ~ 29411285 (-) True XLOC_032908
TCONS_00063948 lncRNA upstream 511564 29497961 ~ 29514132 (-) True XLOC_032909
TCONS_00063919 mRNA downstream 3261 28970513 ~ 28980756 (-) False XLOC_032897
TCONS_00063918 mRNA downstream 22357 28946041 ~ 28961660 (-) True XLOC_032896
TCONS_00063917 mRNA downstream 40961 28914233 ~ 28943056 (-) True XLOC_032895
TCONS_00063916 mRNA downstream 639015 28339662 ~ 28345002 (-) True XLOC_032894
TCONS_00063915 mRNA downstream 761425 28216487 ~ 28222592 (-) True XLOC_032893
TCONS_00063922 mRNA upstream 17665 29004062 ~ 29007493 (-) True XLOC_032899
TCONS_00063924 mRNA upstream 25514 29011911 ~ 29086473 (-) False XLOC_032900
TCONS_00063925 mRNA upstream 31127 29017524 ~ 29049022 (-) False XLOC_032900
TCONS_00063927 mRNA upstream 33368 29019765 ~ 29051788 (-) False XLOC_032900
TCONS_00063926 mRNA upstream 33368 29019765 ~ 29051788 (-) False XLOC_032900
TCONS_00063903 other downstream 1928154 27051342 ~ 27055863 (-) True XLOC_032882
TCONS_00063901 other downstream 1935035 27041747 ~ 27048982 (-) False XLOC_032882
TCONS_00063885 other downstream 3795234 25188023 ~ 25188783 (-) True XLOC_032870
TCONS_00063877 other downstream 4141731 24842170 ~ 24842286 (-) True XLOC_032865
TCONS_00063876 other downstream 4198074 24785827 ~ 24785943 (-) True XLOC_032864
TCONS_00063923 other upstream 25514 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063930 other upstream 58600 29044997 ~ 29052872 (-) False XLOC_032900
TCONS_00063931 other upstream 75253 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063938 other upstream 271841 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063952 other upstream 1216524 30202921 ~ 30203037 (-) True XLOC_032918

Expression Profile

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