RNA id: TCONS_00063925


Basic Information

Item Value
RNA id TCONS_00063925
length 2301
RNA type mRNA
GC content 0.49
exon number 20
gene id XLOC_032900
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 29011911 ~ 29086473 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTCCTTGTCTATGACGTCACCTAGTGCTGCCCTTAGAGGCCCGGGGCCCCTCTCTTTTTCCGAGATCAGGTTGTTGGAGACGGACAGTAAATCTTTACGCTCTGTGAATGGATCTCGAAGGAACAGTGGCTCTTCACTGGTGTCTAGTTCATCCGAGGATTCGTGGATCCTGTGGGGACGCATTGTCAACGAGTGGGAAGATGTGCGGAAAAAGAAGGAAAAACAGCTAAAGgaACTGGTTAGGAAAGGTGTTCCGCATCACTTTCGAGCGATAGTGTGGCAGTTGTTGTGCAATGCCCAGAACCTACCCATAAAGGAGCAGTACtctgagctgctgaagatgaccTCGCCCTGTGAAAAACTCATTCGCAGAGATATTGCCCGTACCTACCCCGAGCACGAGTTCTTTAAAGAGAAGGACAGTCTGGGTCAGGAGGTGCTCTTTAATGTGATGAAGGCTTATTCTCTGGTTGATCGAGAAGTGGGCTACTGTCAAGGAAGTGCTTTTATTGTTGGACTTCTTCTGATGCAGATGCCAGAGGAAGAAGCattctgtgtgtttgtgaaacTGATGCAGGAGTACAGGCTGAGAGAGCTTTTCAAACCCAGTATGGCTGAATTGGGCCTCTGCATGTATCAGTTTGAATGTATGATTCAGGAGCAGCTACCAGAGCTCCATGTGCACTTCCAGGCCCAGAGTTTCCACACCTCCATGTATGCTTCATCCTGGTTCCTCACCATCTTCCTAACCTCTTTTCCTCTTCCTGTTGCCACCAGGATCTTTGATATATTCATGTGTGAGGGTTTAGAGATAGTGTTTCGTGTGGGGATGGCCATCCTGCAGATGAATCAGGCTGAGCTCATGCAGTTGGACATGGAGGGAATGTTGCAGCATTTTCAGAAGGTCATCCCTCATCAGCTGGACAGTGGACCAGACAAAGTCATCCAGGCTGCTTATCAAGTCAAGTACAATGCCAAGAAAATGAAAAAATTGGAAAAGGAGTACACTACAATCAAAACAAAGGAGATGGAGGAACAGGTGGAGATCAAGAGACTACGCACAGAAAACAGACTTCTGAAGCAGCGAATAGACACTCTGGAGAAAGGTCAGGTGACGCGAGCCCAAGAAGCGGAGGAAAACTACCTGGTCAAGCGGGAGCTGGCCACGGTCAAACAGCACATTGAGGAGACCAGCGTACAGCTGGAGCAAGCGCAAAGCACCATCAGACAACTCCAGCAGCCATTTGGGAATCCACGCTACACAGAGGAGTCCATCCTTCAGTTGGAGAGAGAACTGGTGCAGGCCCGTCTAAAGGAGGCTGAGTCTCAGTGTGCACTAAAAGAGATGCAGGACAAGATACTCTATATGGAACAGAGAAATACATCCCTACCAGATGAGAATAATGTGGTACGTCTTCAGGAGGAGCTAATTGGTGTGAAACTGAGGGAGGCAGAGGCTTTAACAGGCCTTAAAGAGCTTCGACAGCAGGTCAGAGATCTGGAGGAGCACTGGCAGAGGCATCTGGCACGGACGGCGGGCCGCTGGAAAGACAGTCCACGCAAGAATGCGGCAAGTGAGCTTCAGGATGAACTGATGAGTGTGAGGCTCAGAGAGGCAGAAGCACAAGCTGAGCTCAGAGAGACCAGACAGAGAATGCTGGAACTGGAGACTCAGAATCAAATACATAGTAATCAGCTTCGACGAGCAGAACTCGAGGCACGAAATCTACAGGATCGATTGCATGTTTTGAGCAACCAGAACAAGATGTTGCATTCAGAGCTGCAGGAGACAAAGCGGAAGCAGGCTGAAATAGAGTGCAAGAATAAAGAAGAGGTAATGGCAGTGAGATTAAGAGAAGCTGACAATATTGCTGCCATGGCTGAGCTTCAGCAGCAAATCTCTGAGCTTGAgattcagaaagaGGAAGGGAAAGTCCAAGGTCAGCTCAACAACACCGACTCCAGCCAGTACATCCGAGACCTCAAGGATCAGATAGCAGATCTCAAGCACGAGGTAATAAGAATGAGATTTCAATCAacTTTTTTTAAAACCCTATACAATCACACAGACTTTTCTAACTTCTTGTTGCCTTCaaacaaaaattttttaaaagaacTGCTATCGGGACCtttagggtgcactcacactttgctatctgaaccgtgcccaggtgCGTTTCCTGGTTCGACAAGTGttagtgctctgaatcgggcccaGGCGCGGTTCAGTTGGCCAGCCCTGCCCCGGTTGGTGTGCCAGAGCGTCGTTTGGTTGGGCTTGGGCAtagtacacttgtag

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041111-244 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Predicted to act upstream of or within regulation of GTPase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human EVI5 (ecotropic viral integration site 5).

Ensembl:

ensembl_id ENSDART00000190309

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065164 lncRNA downstream 31127 28984017 ~ 28986397 (-) True XLOC_032898
TCONS_00063921 lncRNA downstream 36695 28975158 ~ 28980829 (-) True XLOC_032897
TCONS_00063920 lncRNA downstream 45503 28970570 ~ 28972021 (-) False XLOC_032897
TCONS_00065163 lncRNA downstream 887394 28124381 ~ 28130130 (-) True XLOC_032892
TCONS_00063913 lncRNA downstream 1062923 27938489 ~ 27954601 (-) True XLOC_032890
TCONS_00063935 lncRNA upstream 106892 29155914 ~ 29159888 (-) True XLOC_032902
TCONS_00063941 lncRNA upstream 286136 29335158 ~ 29335942 (-) True XLOC_032906
TCONS_00065165 lncRNA upstream 361204 29410226 ~ 29411285 (-) True XLOC_032908
TCONS_00063948 lncRNA upstream 448939 29497961 ~ 29514132 (-) True XLOC_032909
TCONS_00065166 lncRNA upstream 608879 29657901 ~ 29659956 (-) True XLOC_032910
TCONS_00063922 mRNA downstream 10031 29004062 ~ 29007493 (-) True XLOC_032899
TCONS_00063919 mRNA downstream 36768 28970513 ~ 28980756 (-) False XLOC_032897
TCONS_00063918 mRNA downstream 55864 28946041 ~ 28961660 (-) True XLOC_032896
TCONS_00063917 mRNA downstream 74468 28914233 ~ 28943056 (-) True XLOC_032895
TCONS_00063916 mRNA downstream 672522 28339662 ~ 28345002 (-) True XLOC_032894
TCONS_00063932 mRNA upstream 53920 29102942 ~ 29143463 (-) False XLOC_032901
TCONS_00063933 mRNA upstream 53992 29103014 ~ 29105727 (-) True XLOC_032901
TCONS_00063934 mRNA upstream 95754 29144776 ~ 29159888 (-) False XLOC_032902
TCONS_00063936 mRNA upstream 135115 29184137 ~ 29195642 (-) True XLOC_032903
TCONS_00063937 mRNA upstream 178467 29227489 ~ 29288155 (-) False XLOC_032904
TCONS_00063903 other downstream 1961661 27051342 ~ 27055863 (-) True XLOC_032882
TCONS_00063901 other downstream 1968542 27041747 ~ 27048982 (-) False XLOC_032882
TCONS_00063885 other downstream 3828741 25188023 ~ 25188783 (-) True XLOC_032870
TCONS_00063877 other downstream 4175238 24842170 ~ 24842286 (-) True XLOC_032865
TCONS_00063876 other downstream 4231581 24785827 ~ 24785943 (-) True XLOC_032864
TCONS_00063931 other upstream 12628 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063938 other upstream 209216 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063952 other upstream 1153899 30202921 ~ 30203037 (-) True XLOC_032918
TCONS_00063998 other upstream 3260666 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00064000 other upstream 3345480 32394502 ~ 32405841 (-) False XLOC_032943

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00004920 True 2241 mRNA 0.54 17 CM030140.1 9476837 ~ 9515322 (-)