RNA id: TCONS_00063928


Basic Information

Item Value
RNA id TCONS_00063928
length 2397
RNA type mRNA
GC content 0.46
exon number 19
gene id XLOC_032900
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 29011911 ~ 29086473 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTACTAGTCTACTAGTTTCTCCGGGGGGAAGCTCGGACCAGAcatgtgcttttacgacagtttgTTGGTTAacttttataattaatgttctctcCTATGATTTTTTTATATCCAGGTTGTTGGAGACGGACAGTAAATCTTTACGCTCTGTGAATGGATCTCGAAGGAACAGTGGCTCTTCACTGGTGTCTAGTTCATCCGCCTCCTCCAACTTGTCGCATTTGGAGGAGGATTCGTGGATCCTGTGGGGACGCATTGTCAACGAGTGGGAAGATGTGCGGAAAAAGAAGGAAAAACAGCTAAAGgaACTGGTTAGGAAAGGTGTTCCGCATCACTTTCGAGCGATAGTGTGGCAGTTGTTGTGCAATGCCCAGAACCTACCCATAAAGGAGCAGTACtctgagctgctgaagatgaccTCGCCCTGTGAAAAACTCATTCGCAGAGATATTGCCCGTACCTACCCCGAGCACGAGTTCTTTAAAGAGAAGGACAGTCTGGGTCAGGAGGTGCTCTTTAATGTGATGAAGGCTTATTCTCTGGTTGATCGAGAAGTGGGCTACTGTCAAGGAAGTGCTTTTATTGTTGGACTTCTTCTGATGCAGATGCCAGAGGAAGAAGCattctgtgtgtttgtgaaacTGATGCAGGAGTACAGGCTGAGAGAGCTTTTCAAACCCAGTATGGCTGAATTGGGCCTCTGCATGTATCAGTTTGAATGTATGATTCAGGAGCAGCTACCAGAGCTCCATGTGCACTTCCAGGCCCAGAGTTTCCACACCTCCATGTATGCTTCATCCTGGTTCCTCACCATCTTCCTAACCTCTTTTCCTCTTCCTGTTGCCACCAGGATCTTTGATATATTCATGTtctgttttgtttttgtatgttttGGTTTAGAGATAGTGTTTCGTGTGGGGATGGCCATCCTGCAGATGAATCAGGCTGAGCTCATGCAGTTGGACATGGAGGGAATGTTGCAGCATTTTCAGAAGGTCATCCCTCATCAGCTGGACAGTGGACCAGACAAAGTCATCCAGGCTGCTTATCAAGTCAAGTACAATGCCAAGAAAATGAAAAAATTGGAAAAGGAGTACACTACAATCAAAACAAAGGAGATGGAGGAACAGGTGGAGATCAAGAGACTACGCACAGAAAACAGACTTCTGAAGCAGCGAATAGACACTCTGGAGAAAGTGAGTGACATAACAGACGATTCGAAACATTTATCGGGTCAGGTGACGCGAGCCCAAGAAGCGGAGGAAAACTACCTGGTCAAGCGGGAGCTGGCCACGGTCAAACAGCACATTGAGGAGACCAGCGTACAGCTGGAGCAAGCGCAAAGCACCATCAGACAACTCCAGCAGCCATTTGGGAATCCACGCTACACAGAGGAGTCCATCCTTCAGTTGGAGAGAGAACTGGTGCAGGCCCGTCTAAAGGAGGCTGAGTCTCAGTGTGCACTAAAAGAGATGCAGGACAAGATACTCTATATGGAACAGAGAAATACATCCCTACCAGATGAGAATAATGTGGTACGTCTTCAGGAGGAGCTAATTGGTGTGAAACTGAGGGAGGCAGAGGCTTTAACAGGCCTTAAAGAGCTTCGACAGCAGGTCAGAGATCTGGAGGAGCACTGGCAGAGGCATCTGGCACGGACGGCGGGCCGCTGGAAAGACAGTCCACGCAAGAATGCGGCAAGTGAGCTTCAGGATGAACTGATGAGTGTGAGGCTCAGAGAGGCAGAAGCACAAGCTGAGCTCAGAGAGACCAGACAGAGAATGCTGGAACTGGAGACTCAGAATCAAATACATAGTAATCAGCTTCGACGAGCAGAACTCGAGGCACGAAATCTACAGGATCGATTGCATGTTTTGAGCAACCAGAACAAGATGTTGCATTCAGAGCTGCAGGAGACAAAGCGGAAGCAGGCTGAAATAGAGTGCAAGAATAAAGAAGAGGTAATGGCAGTGAGATTAAGAGAAGCTGACAATATTGCTGCCATGGCTGAGCTTCAGCAGCAAATCTCTGAGCTTGAgattcagaaagaGGAAGGGAAAGTCCAAGGTCAGCTCAACAACACCGACTCCAGCCAGTACATCCGAGACCTCAAGGATCAGATAGCAGATCTCAAGCACGAGGTAATAAGAATGAGATTTCAATCAagtttgaaaaaaacattttttaaggttTCGTTGTTTTGTGTTCGTTTAAGCAGTTTTCAGATATATTTGACACACACCATTAGATATTTGTTACAAAATGTATGTTGtcttttgtcaaataaatatattGGGGTTCCAGTCTCATTGAATTCCacgttgtttaaattgcaaagccatgtgtgccactttgtggactcacgggtgtgctggtctaaaatagaggtgtgttaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041111-244 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Predicted to act upstream of or within regulation of GTPase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human EVI5 (ecotropic viral integration site 5).

Ensembl:

ensembl_id ENSDART00000190508

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065164 lncRNA downstream 35188 28984017 ~ 28986397 (-) True XLOC_032898
TCONS_00063921 lncRNA downstream 40756 28975158 ~ 28980829 (-) True XLOC_032897
TCONS_00063920 lncRNA downstream 49564 28970570 ~ 28972021 (-) False XLOC_032897
TCONS_00065163 lncRNA downstream 891455 28124381 ~ 28130130 (-) True XLOC_032892
TCONS_00063913 lncRNA downstream 1066984 27938489 ~ 27954601 (-) True XLOC_032890
TCONS_00063935 lncRNA upstream 104141 29155914 ~ 29159888 (-) True XLOC_032902
TCONS_00063941 lncRNA upstream 283385 29335158 ~ 29335942 (-) True XLOC_032906
TCONS_00065165 lncRNA upstream 358453 29410226 ~ 29411285 (-) True XLOC_032908
TCONS_00063948 lncRNA upstream 446188 29497961 ~ 29514132 (-) True XLOC_032909
TCONS_00065166 lncRNA upstream 606128 29657901 ~ 29659956 (-) True XLOC_032910
TCONS_00063922 mRNA downstream 14092 29004062 ~ 29007493 (-) True XLOC_032899
TCONS_00063919 mRNA downstream 40829 28970513 ~ 28980756 (-) False XLOC_032897
TCONS_00063918 mRNA downstream 59925 28946041 ~ 28961660 (-) True XLOC_032896
TCONS_00063917 mRNA downstream 78529 28914233 ~ 28943056 (-) True XLOC_032895
TCONS_00063916 mRNA downstream 676583 28339662 ~ 28345002 (-) True XLOC_032894
TCONS_00063932 mRNA upstream 51169 29102942 ~ 29143463 (-) False XLOC_032901
TCONS_00063933 mRNA upstream 51241 29103014 ~ 29105727 (-) True XLOC_032901
TCONS_00063934 mRNA upstream 93003 29144776 ~ 29159888 (-) False XLOC_032902
TCONS_00063936 mRNA upstream 132364 29184137 ~ 29195642 (-) True XLOC_032903
TCONS_00063937 mRNA upstream 175716 29227489 ~ 29288155 (-) False XLOC_032904
TCONS_00063903 other downstream 1965722 27051342 ~ 27055863 (-) True XLOC_032882
TCONS_00063901 other downstream 1972603 27041747 ~ 27048982 (-) False XLOC_032882
TCONS_00063885 other downstream 3832802 25188023 ~ 25188783 (-) True XLOC_032870
TCONS_00063877 other downstream 4179299 24842170 ~ 24842286 (-) True XLOC_032865
TCONS_00063876 other downstream 4235642 24785827 ~ 24785943 (-) True XLOC_032864
TCONS_00063931 other upstream 9877 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063938 other upstream 206465 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063952 other upstream 1151148 30202921 ~ 30203037 (-) True XLOC_032918
TCONS_00063998 other upstream 3257915 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00064000 other upstream 3342729 32394502 ~ 32405841 (-) False XLOC_032943

Expression Profile

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