RNA id: TCONS_00063931


Basic Information

Item Value
RNA id TCONS_00063931
length 932
RNA type processed_transcript
GC content 0.39
exon number 2
gene id XLOC_032900
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 29011911 ~ 29086473 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCTGCGCATACACAGCCTTTATACATTCAGCCTCTCTATGGACTGGACTGTTGAAATCCTGCCCTAGTGTGAAAACTGACCGCTGACGTCGGGCTTGAACCCTcagtgtgcgcgtgtgtgcaaGGTTATGCAACTTTACCTCGCTCTATGGAAAGTTAATATTTAGCTTAAACCCCTGGAACTGAAAAAGACTTCAAGGTGGCGACAGACAAGGTAACAGGTAAGCTGAGTTCGACTCTTTCATGGGTGAAGAACTCAGTGTCGCACACGGTGAGTCAGATGGCTAGTCAGGTGGCCACTCCGTCTTCGCTACACACCACTGTGGCTTCATCCACTGCCTCGCTGTCCTCACCCTCCTCAGCCTCGCCGACTCAGCTCAGCCCAGATGATGTGGAGCTGCTGGCCAAACTAGAGGAGCAGAACAGGTACGAGCACTTCAGTCTTCACCAAAGCTTGTCATTTTTACAATTGCTAAAATCCCCAAAGCATGCACAATGCTTGCAATGtgttatattttaacaattttttttagtaaaatctTAGAATTTTGATCATGTTTTGCCATGAAACATCCAGAGAAGCTGATAACtctgtctttctgtctctgtACAACCCTAAAAAAGAATTtggcctattattattgttctagAATGtactatatttaataaaacattaaaataatagatggaaatgaaatgaaaaaaaaaaaactttttaaagcaaCAATCACACAATCTTTTTTAACTGTTTAAATTATTGGCACTCAGATAGATCTGATCTGAACTGATCACAATTGTTTGTTTACGAGTTTACATGCAGTAGACAAATAAGAACTGAATTCTTTTAACATATCTGAACTAAAAGTTCTGTGTTTTCAACAATATTGCAGGTTCATGAAACCTacctgtaaataaaataataaaaaaaaaaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041111-244 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Predicted to act upstream of or within regulation of GTPase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human EVI5 (ecotropic viral integration site 5).

Ensembl:

ensembl_id ENSDART00000135825

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063929 lncRNA downstream 16357 29044639 ~ 29045293 (-) False XLOC_032900
TCONS_00065164 lncRNA downstream 75253 28984017 ~ 28986397 (-) True XLOC_032898
TCONS_00063921 lncRNA downstream 80821 28975158 ~ 28980829 (-) True XLOC_032897
TCONS_00063920 lncRNA downstream 89629 28970570 ~ 28972021 (-) False XLOC_032897
TCONS_00065163 lncRNA downstream 931520 28124381 ~ 28130130 (-) True XLOC_032892
TCONS_00063935 lncRNA upstream 71263 29155914 ~ 29159888 (-) True XLOC_032902
TCONS_00063941 lncRNA upstream 250507 29335158 ~ 29335942 (-) True XLOC_032906
TCONS_00065165 lncRNA upstream 325575 29410226 ~ 29411285 (-) True XLOC_032908
TCONS_00063948 lncRNA upstream 413310 29497961 ~ 29514132 (-) True XLOC_032909
TCONS_00065166 lncRNA upstream 573250 29657901 ~ 29659956 (-) True XLOC_032910
TCONS_00063927 mRNA downstream 9862 29019765 ~ 29051788 (-) False XLOC_032900
TCONS_00063926 mRNA downstream 9862 29019765 ~ 29051788 (-) False XLOC_032900
TCONS_00063928 mRNA downstream 9877 29021585 ~ 29051773 (-) False XLOC_032900
TCONS_00063925 mRNA downstream 12628 29017524 ~ 29049022 (-) False XLOC_032900
TCONS_00063922 mRNA downstream 54157 29004062 ~ 29007493 (-) True XLOC_032899
TCONS_00063932 mRNA upstream 18291 29102942 ~ 29143463 (-) False XLOC_032901
TCONS_00063933 mRNA upstream 18363 29103014 ~ 29105727 (-) True XLOC_032901
TCONS_00063934 mRNA upstream 60125 29144776 ~ 29159888 (-) False XLOC_032902
TCONS_00063936 mRNA upstream 99486 29184137 ~ 29195642 (-) True XLOC_032903
TCONS_00063937 mRNA upstream 142838 29227489 ~ 29288155 (-) False XLOC_032904
TCONS_00063930 other downstream 8778 29044997 ~ 29052872 (-) False XLOC_032900
TCONS_00063903 other downstream 2005787 27051342 ~ 27055863 (-) True XLOC_032882
TCONS_00063901 other downstream 2012668 27041747 ~ 27048982 (-) False XLOC_032882
TCONS_00063885 other downstream 3872867 25188023 ~ 25188783 (-) True XLOC_032870
TCONS_00063877 other downstream 4219364 24842170 ~ 24842286 (-) True XLOC_032865
TCONS_00063938 other upstream 173587 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063952 other upstream 1118270 30202921 ~ 30203037 (-) True XLOC_032918
TCONS_00063998 other upstream 3225037 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00064000 other upstream 3309851 32394502 ~ 32405841 (-) False XLOC_032943
TCONS_00064015 other upstream 4358683 33443334 ~ 33443455 (-) True XLOC_032953

Expression Profile

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