RNA id: TCONS_00063941


Basic Information

Item Value
RNA id TCONS_00063941
length 565
lncRNA type retained_intron
GC content 0.38
exon number 3
gene id XLOC_032906
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 29313220 ~ 29377092 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATGTGGGACGCTGATGTAGATCTCCACCAGCGGCTCCTAAAAAGATGGCGAGAGCTCAAGGAGCAATCAGGCCATGAGGTCGAAGCCTTCTTTGAAGTGGACACAGATCTGCAGAAAAATGTGCAGGCCAAGATTTCAGCAAAGCTCAAATGGCCCTCGCTGCTCAACTCTACCCTACAACAGATCCATTTTCctctcacaaacacaaacagCTCATCTGAGGAAGAAGTGATTCTAGAAAACTCTGCTGATGTCCCAGTCTACGTTCAGGTTCTTCCTCTGGCTTTATACCCCAATCCCTCAGTGTTCACTGGCAAACTTGCTGACAGGTAAGATTTCCCACTTTCTTTCAGGAATGTTATAGCTTATAGTTTTTAAGAATGTAGTGTATATATAGTAAAGGTTATTTAGTATAAATAAGGtttcaatttatataaataaaaaatattatttaaaactcaAAGTATTACAGCTAGTTGccatagaaaatgtattttacttttgcttaacTTCCTAAGATGTGCTAGAGTGGAATATtcttaaattatacaaataaatagagt

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-662 Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human TMEM131 (transmembrane protein 131).

Ensembl:

ensembl_id ENSDART00000155586

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063935 lncRNA downstream 175270 29155914 ~ 29159888 (-) True XLOC_032902
TCONS_00063929 lncRNA downstream 289865 29044639 ~ 29045293 (-) False XLOC_032900
TCONS_00065164 lncRNA downstream 348761 28984017 ~ 28986397 (-) True XLOC_032898
TCONS_00063921 lncRNA downstream 354329 28975158 ~ 28980829 (-) True XLOC_032897
TCONS_00063920 lncRNA downstream 363137 28970570 ~ 28972021 (-) False XLOC_032897
TCONS_00065165 lncRNA upstream 74284 29410226 ~ 29411285 (-) True XLOC_032908
TCONS_00063948 lncRNA upstream 162019 29497961 ~ 29514132 (-) True XLOC_032909
TCONS_00065166 lncRNA upstream 321959 29657901 ~ 29659956 (-) True XLOC_032910
TCONS_00065167 lncRNA upstream 415018 29750960 ~ 29752357 (-) True XLOC_032911
TCONS_00065168 lncRNA upstream 435425 29771367 ~ 29781449 (-) False XLOC_032912
TCONS_00063939 mRNA downstream 30026 29295310 ~ 29305132 (-) True XLOC_032905
TCONS_00063937 mRNA downstream 47003 29227489 ~ 29288155 (-) False XLOC_032904
TCONS_00063936 mRNA downstream 139516 29184137 ~ 29195642 (-) True XLOC_032903
TCONS_00063934 mRNA downstream 175270 29144776 ~ 29159888 (-) False XLOC_032902
TCONS_00063932 mRNA downstream 191695 29102942 ~ 29143463 (-) False XLOC_032901
TCONS_00063942 mRNA upstream 61612 29397554 ~ 29402578 (-) True XLOC_032907
TCONS_00063943 mRNA upstream 140991 29476933 ~ 29612269 (-) False XLOC_032909
TCONS_00063944 mRNA upstream 141870 29477812 ~ 29515709 (-) False XLOC_032909
TCONS_00063945 mRNA upstream 141870 29477812 ~ 29537219 (-) False XLOC_032909
TCONS_00063947 mRNA upstream 141870 29477812 ~ 29538085 (-) False XLOC_032909
TCONS_00063938 other downstream 60750 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063931 other downstream 250507 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063923 other downstream 250604 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063930 other downstream 282286 29044997 ~ 29052872 (-) False XLOC_032900
TCONS_00063903 other downstream 2279295 27051342 ~ 27055863 (-) True XLOC_032882
TCONS_00063952 other upstream 866979 30202921 ~ 30203037 (-) True XLOC_032918
TCONS_00063998 other upstream 2973746 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00064000 other upstream 3058560 32394502 ~ 32405841 (-) False XLOC_032943
TCONS_00064015 other upstream 4107392 33443334 ~ 33443455 (-) True XLOC_032953
TCONS_00064019 other upstream 4342435 33678377 ~ 33681084 (-) True XLOC_032954

Expression Profile

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