RNA id: TCONS_00063945


Basic Information

Item Value
RNA id TCONS_00063945
length 1506
RNA type mRNA
GC content 0.53
exon number 11
gene id XLOC_032909
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 29476933 ~ 29612269 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgtatctaAATTACATGCAAAAACTCATTCCTCAAAATCTATATCTGGTGAGCGAGCAACAAGAGAGTCGTCCCTTGCTGAGCCCTTCCATCGATGATTTCCTCTGCGAGACCAAGTGTGATGGTGCTGCCCGACCAGTAACCTCAAACACAGCAGTACTGTCCTCCTCTCTGGACCTGCTGGATCTGAGTGAGCCTGGTGAGAGAAGACACAGCAAAGACAGAAAGAGCCCTCTTTCTTCTAAAAGCACACCGTATAGGAAGAAGCCAGATGAAACAGAGCTGATCCAAGTGGACATTGAACAGAGCATTCCCTGTTCCCGCACACCTGAAAAAATCTCATTGGACTCAGGTATTATAAAGCAGAGGTGGGGCAGCACACTGCTGTCCAGAAACCAGTCTCTGGAGGAGGAGTTTGAGAGAGCGAAGGCAGCAGTGGAGTCAGACACAGAGTTTTGGGATAAGATGCAGGCAGAATGGGAAGAACTTGCTCGCAGAAACTGGCTTACAGAAAATGAGCAGCCACAGATTCCCTCCAATGTGTCTCCTTACGAAAAGGGCTATTACTTCCACACAGATAACCCTTTCAAAGACTGGCCAAATGCTTTTGAGGAGGGATTGCGCAAGTCGAGAGAAGGAGAGCTGCCGAACGCTGTGCTTCTTCTGGAAGCTGCCGTTCTGCAGGACCCTCAGGATTCAGAGGCTTGGCTGGTGCTGGGAACCACACAAGCAGAGAATGAGAATGAGCAGGCAGCAATTGTCTCCCTCCAGAGGTGTCTGGAGCTCCACCCCAACAACCTCCAGGCCCTTATGGCTCTGGCAGTGAGCCTGACCAACACGGGCATGAGGCAGGAAGCGTGTGAGGCGCTGCTGGGCTGGATAAGACACAACCCCAAATATAAGCATCTTCTGAAGAGCCGCACGCACCTGCAGGGCTCACCTGGATCACGGAGACCCTCCTATCCCTGCCCAGTCAGCTGCCCCCTACTGCCAGAGGTGAAGGATCTTTACCTGGAATCGGCCCAGCAGAACGTGGACACCATTGACCCAGACCTACAGACTGGGTTGGGAGTGCTGTATAACCTCAGCTCTGAGTTCAACAAAGCAGTTGATGCTTTCAATGCAGCGCTGTCAGTGCGGCCGGAGGACTACCTGCTGTGGAATCGGCTGGGGGCGACGCTGGCTAATGGAGATCGCAGTGAGGAAGCAGTGGAGGCCTATACCAAAGCCCTGGAGCTCCAGCCTGGCTTCATCCGCTCACGTTACAACCTCGGCATCAGCTGCATTAACATGGGCGCTCACAGGGAGGCAGCCAGTAATTTCCTGACGGCCCTTGGTCTGCAGAGGAAGAGCAGGAGTCGTCAGCTTTCCCACCAGGTGATGTCTGGAAACATCTGGGCAGCGCTGCGGATCGCTCTCTCCATGCTGGACCAGCCGGAGCTCTTTCAAGCTGCTAACATCGGAGACCTGGATTTACTAATGAAAGCTTTCAACCTGGACATGTGA

Function

GO:

id name namespace
GO:0016560 protein import into peroxisome matrix, docking biological_process
GO:0005778 peroxisomal membrane cellular_component
GO:0005829 cytosol cellular_component
GO:0005052 peroxisome matrix targeting signal-1 binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-298 Predicted to enable peroxisome matrix targeting signal-1 binding activity. Predicted to be involved in protein import into peroxisome matrix, docking. Predicted to be active in cytosol and peroxisomal membrane. Orthologous to human PEX5L (peroxisomal biogenesis factor 5 like).

Ensembl:

ensembl_id ENSDART00000180262

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065165 lncRNA downstream 66527 29410226 ~ 29411285 (-) True XLOC_032908
TCONS_00063941 lncRNA downstream 141870 29335158 ~ 29335942 (-) True XLOC_032906
TCONS_00063935 lncRNA downstream 317924 29155914 ~ 29159888 (-) True XLOC_032902
TCONS_00063929 lncRNA downstream 432519 29044639 ~ 29045293 (-) False XLOC_032900
TCONS_00065164 lncRNA downstream 491415 28984017 ~ 28986397 (-) True XLOC_032898
TCONS_00065166 lncRNA upstream 120682 29657901 ~ 29659956 (-) True XLOC_032910
TCONS_00065167 lncRNA upstream 213741 29750960 ~ 29752357 (-) True XLOC_032911
TCONS_00065168 lncRNA upstream 234148 29771367 ~ 29781449 (-) False XLOC_032912
TCONS_00065169 lncRNA upstream 234148 29771367 ~ 29790041 (-) False XLOC_032912
TCONS_00065170 lncRNA upstream 234148 29771367 ~ 29790042 (-) False XLOC_032912
TCONS_00063942 mRNA downstream 75234 29397554 ~ 29402578 (-) True XLOC_032907
TCONS_00063940 mRNA downstream 100720 29313220 ~ 29377092 (-) False XLOC_032906
TCONS_00063939 mRNA downstream 172680 29295310 ~ 29305132 (-) True XLOC_032905
TCONS_00063937 mRNA downstream 189657 29227489 ~ 29288155 (-) False XLOC_032904
TCONS_00063936 mRNA downstream 282170 29184137 ~ 29195642 (-) True XLOC_032903
TCONS_00063950 mRNA upstream 586978 30124197 ~ 30210378 (-) False XLOC_032917
TCONS_00063951 mRNA upstream 592764 30129983 ~ 30210378 (-) True XLOC_032917
TCONS_00063954 mRNA upstream 946786 30484005 ~ 30485009 (-) True XLOC_032921
TCONS_00063955 mRNA upstream 1088726 30625945 ~ 30658848 (-) False XLOC_032922
TCONS_00063956 mRNA upstream 1092774 30629993 ~ 30658755 (-) True XLOC_032922
TCONS_00063938 other downstream 203404 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063931 other downstream 393161 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063923 other downstream 393258 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063930 other downstream 424940 29044997 ~ 29052872 (-) False XLOC_032900
TCONS_00063903 other downstream 2421949 27051342 ~ 27055863 (-) True XLOC_032882
TCONS_00063952 other upstream 665702 30202921 ~ 30203037 (-) True XLOC_032918
TCONS_00063998 other upstream 2772469 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00064000 other upstream 2857283 32394502 ~ 32405841 (-) False XLOC_032943
TCONS_00064015 other upstream 3906115 33443334 ~ 33443455 (-) True XLOC_032953
TCONS_00064019 other upstream 4141158 33678377 ~ 33681084 (-) True XLOC_032954