RNA id: TCONS_00065167


Basic Information

Item Value
RNA id TCONS_00065167
length 651
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_032911
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 29750960 ~ 29752357 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAAAGCATCCAGTAAGCCAGTCTTCACATCAAGTTGATATTTATGACAACATTTGCATAGCAGTTGTACAACTGCTCAATTTAATGCATGGTAAATAACGTCAATGCCTAGATTTTGGAAGACCTGTTTAAATCAGAGAAGCTCCAGGAATGTGTCACTGTTTAACCAGTCCTTACAAGTATTTTGAGAAGAAAAATGTTTCCTCGTTGACTTAGAAGCTTTGATTATGCTGGTCCTCAAAATAAATACTTGTTCTCAAGTTAATTTTACCACTGGGGCCTCGACTGTTCCCAGTTGTCCCTCCTCCCATCCACTCGAATAGGTCCCTGACCATACATGGTGTTAGTTGAAGAAAGCAGCAGCTCAGAGAGCTGGAGGAAGAAGTGATCTGCCATTTAAACAAGCCTGCGTGTGAAAGGGAGGACCCTGTAACATGGACTCGGTAGCACTGACTGGCCAAGTAACTCCTCCACCGCAAACATTTACACTGTAATAGGCTAGTGTGGAGCTAAAAATGGCCTCTGGAACTATAACTGCTGAGAAACAGAAACTTCAGCTGCACTGTATGTTTCGCTCAGCTTGTGAAGACTTGAATCGACTTTTACTGCAAATAGGAGTTTTTGGGTGTGTATGTTGAAAGACGACATTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065166 lncRNA downstream 91004 29657901 ~ 29659956 (-) True XLOC_032910
TCONS_00063948 lncRNA downstream 236828 29497961 ~ 29514132 (-) True XLOC_032909
TCONS_00065165 lncRNA downstream 339675 29410226 ~ 29411285 (-) True XLOC_032908
TCONS_00063941 lncRNA downstream 415018 29335158 ~ 29335942 (-) True XLOC_032906
TCONS_00063935 lncRNA downstream 591072 29155914 ~ 29159888 (-) True XLOC_032902
TCONS_00065168 lncRNA upstream 19010 29771367 ~ 29781449 (-) False XLOC_032912
TCONS_00065169 lncRNA upstream 19010 29771367 ~ 29790041 (-) False XLOC_032912
TCONS_00065170 lncRNA upstream 19010 29771367 ~ 29790042 (-) False XLOC_032912
TCONS_00065171 lncRNA upstream 19010 29771367 ~ 29790125 (-) False XLOC_032912
TCONS_00065172 lncRNA upstream 35946 29788303 ~ 29789959 (-) True XLOC_032912
TCONS_00063943 mRNA downstream 138691 29476933 ~ 29612269 (-) False XLOC_032909
TCONS_00063947 mRNA downstream 212875 29477812 ~ 29538085 (-) False XLOC_032909
TCONS_00063946 mRNA downstream 212875 29477812 ~ 29538085 (-) False XLOC_032909
TCONS_00063945 mRNA downstream 213741 29477812 ~ 29537219 (-) False XLOC_032909
TCONS_00063944 mRNA downstream 235251 29477812 ~ 29515709 (-) False XLOC_032909
TCONS_00063950 mRNA upstream 371840 30124197 ~ 30210378 (-) False XLOC_032917
TCONS_00063951 mRNA upstream 377626 30129983 ~ 30210378 (-) True XLOC_032917
TCONS_00063954 mRNA upstream 731648 30484005 ~ 30485009 (-) True XLOC_032921
TCONS_00063955 mRNA upstream 873588 30625945 ~ 30658848 (-) False XLOC_032922
TCONS_00063956 mRNA upstream 877636 30629993 ~ 30658755 (-) True XLOC_032922
TCONS_00063938 other downstream 476552 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063931 other downstream 666309 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063923 other downstream 666406 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063930 other downstream 698088 29044997 ~ 29052872 (-) False XLOC_032900
TCONS_00063903 other downstream 2695097 27051342 ~ 27055863 (-) True XLOC_032882
TCONS_00063952 other upstream 450564 30202921 ~ 30203037 (-) True XLOC_032918
TCONS_00063998 other upstream 2557331 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00064000 other upstream 2642145 32394502 ~ 32405841 (-) False XLOC_032943
TCONS_00064015 other upstream 3690977 33443334 ~ 33443455 (-) True XLOC_032953
TCONS_00064019 other upstream 3926020 33678377 ~ 33681084 (-) True XLOC_032954

Expression Profile

//