RNA id: TCONS_00065172


Basic Information

Item Value
RNA id TCONS_00065172
length 670
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_032912
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 29771367 ~ 29790125 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACGCTCAGGACTGGATTTTCGCAAGGATCATTCTCCACCATTACCTCTGCTATAAAGCTACTCCTACAACAAACTGTGAGAGGGATTGCTCAGTGATCTCTGGCATCTAAATGGAGTCTTTTCCTGTCTGCAACAATAATAACCAATCTGGAAATCCCCCTGCTTTGCTGCCGTCTGGTATGGTTGGTCACGTGATTTAACGCAGTCCCAGGGGCTCAGAGCCCTATTGCCCTGGTCTCTTGGATGGTCCTGTTTACTTACACCATCTTATTGCTGCTGAGAATTCACAAATGGCCTCGGGACTAAAATATGGTCATCCCCTGTTCATTACTGCCCAGGTCATCTAGTAGCACAAAATATCGAGGAAGAGTAATTGGATTAATTTAGTATATTATCATTATAGATTTGTTAAAGATGTTCTTGCTCTTCtataacacacacatgcacaaacacacagatatatGCGCTGTGCACTTGTATACAGTCTAGTTTATAAActgtgtatatacactcaccggccactttattaggtacacctgtacaactgctcgttaatgcaaatttctaatcagccaatcgcatggcagcaactcaatgcatttaggcatgtacacatgatcaagatgatctgctgcagttaaaaccgAGCATCACAAtgagaaagaaag

Function

GO:

id name namespace
GO:0043005 neuron projection cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0098797 plasma membrane protein complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065168 lncRNA downstream 6854 29771367 ~ 29781449 (-) False XLOC_032912
TCONS_00065167 lncRNA downstream 35946 29750960 ~ 29752357 (-) True XLOC_032911
TCONS_00065166 lncRNA downstream 128347 29657901 ~ 29659956 (-) True XLOC_032910
TCONS_00063948 lncRNA downstream 274171 29497961 ~ 29514132 (-) True XLOC_032909
TCONS_00065165 lncRNA downstream 377018 29410226 ~ 29411285 (-) True XLOC_032908
TCONS_00064745 lncRNA upstream 36495 29826454 ~ 29831148 (-) False XLOC_032913
TCONS_00064746 lncRNA upstream 36495 29826454 ~ 29831187 (-) False XLOC_032913
TCONS_00063949 lncRNA upstream 36495 29826454 ~ 29831187 (-) True XLOC_032913
TCONS_00065173 lncRNA upstream 56534 29846493 ~ 29848620 (-) False XLOC_032914
TCONS_00065174 lncRNA upstream 56534 29846493 ~ 29848708 (-) False XLOC_032914
TCONS_00063943 mRNA downstream 176034 29476933 ~ 29612269 (-) False XLOC_032909
TCONS_00063947 mRNA downstream 250218 29477812 ~ 29538085 (-) False XLOC_032909
TCONS_00063946 mRNA downstream 250218 29477812 ~ 29538085 (-) False XLOC_032909
TCONS_00063945 mRNA downstream 251084 29477812 ~ 29537219 (-) False XLOC_032909
TCONS_00063944 mRNA downstream 272594 29477812 ~ 29515709 (-) False XLOC_032909
TCONS_00063950 mRNA upstream 334238 30124197 ~ 30210378 (-) False XLOC_032917
TCONS_00063951 mRNA upstream 340024 30129983 ~ 30210378 (-) True XLOC_032917
TCONS_00063954 mRNA upstream 694046 30484005 ~ 30485009 (-) True XLOC_032921
TCONS_00063955 mRNA upstream 835986 30625945 ~ 30658848 (-) False XLOC_032922
TCONS_00063956 mRNA upstream 840034 30629993 ~ 30658755 (-) True XLOC_032922
TCONS_00063938 other downstream 513895 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063931 other downstream 703652 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063923 other downstream 703749 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063930 other downstream 735431 29044997 ~ 29052872 (-) False XLOC_032900
TCONS_00063903 other downstream 2732440 27051342 ~ 27055863 (-) True XLOC_032882
TCONS_00063952 other upstream 412962 30202921 ~ 30203037 (-) True XLOC_032918
TCONS_00063998 other upstream 2519729 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00064000 other upstream 2604543 32394502 ~ 32405841 (-) False XLOC_032943
TCONS_00064015 other upstream 3653375 33443334 ~ 33443455 (-) True XLOC_032953
TCONS_00064019 other upstream 3888418 33678377 ~ 33681084 (-) True XLOC_032954

Expression Profile

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