RNA id: TCONS_00064746


Basic Information

Item Value
RNA id TCONS_00064746
length 2448
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id XLOC_032913
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 29826454 ~ 29831187 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGCCAACGGAACACAACACATTCAGTGCTAGCTGCCTCAAGAGATCCGACGAGACGGAGTTTCTTTCAATAAAGTTATGGTCACCACTGCACGTGAATGCACAACTGATGGATCTCTCTGCATGAACAAGGGTCATTGGAAAACCACACAACTACAACGAAGATGGGAATTCTTGAAACAGTAAGCAGCAGCCACTTAATAACAGCCCTGTCAACTGTGCTGAATGTCTGCTGTCCTGGAAGAGGAGATGGTGCTCGACAGCTTTATGCTTTTGGATTATTGTATCCAAAAGTTCCTCttgaagatttttttcatttgtgtcaACTGGGTTAAGTAATCCATTGTTAAGATTTGATGgtgttttttatgctttttggTGGGACACAAAATGCTAGACTGGGACAGTGACAGATTGTGGCCTAAACCCAGCCATGGTCCAGAACCTCAACCAGATCTATTCATTCTGCTGGGTTTCTCTGCAGGCAGGAGCGGATCAGGCTGCAACACTTCTGCTCATTTACATCTATTCTAAACTGTAAGACAGATTTGATAACTTGTCCTGCATAATCTGCACAGCTAAATCTAGATAATTCTATGTAGTCTGCAGTCCggtttctttcttctcttttgTTAGAGAATTAAAGAATTTGACGTTGTTGTGTTGAAGATCTTAGTCAGACAAGCCAGACTTGGACCAAATGTTGAAGTTGATGAGATTGTGGTCATGGGTGTCATGAAATcccacacacacaagtgaaaacAGCAGCACACCTAGCAAATATACTATGGCCAGCTCCACATATTTTCCCATAGATTTAAATTTGGGTACATTAGTGTTCCTGTGAGAAGATgctttacaattaaaataatgctCATAATGTTAACAGTAAAAAAGTCAAAATCTACAACCTGGTTATAGCCTATAACCtagttttatgttatatttaatgttaattgCACCAGTTGTTAAGTAGTTGTGCGAATGATAGTGTGAACAATTAGTTGTTCATCATGCGACTTTCTCATCACCACATACATTTGGTTGTGTTTTTGTAACTATAACAAAGTTTTCAATGTAGAAACTTAATAATCTGAGCGatctgaattataattatttagtGCATACCCATAAAGGTTGTATATTCTGCACTCTGAAGGAGATCACCACAGCCAAAGTCAATAAGCTTGACTTCTAGTGTGTCCCTGTTGATAAGGAGGTTCTCCTGTTTAATATCTCGGTGGAAAACACCTTTGCAGCTCATGTATGTGGCTGTTATTGCCTGCCACATTACAATCCGTGCCAGTTCTTTATCAAGTCTCTCTGTGGCTCTGGACGAAAACGAAGAGGTCCTCGCAGGGATCAGACCGCTCCAGCACCATGATGTAATAGTTCCCCTTATCATTCCAGTCCAGCAGCTGGATAATTTGAAAGACTCTGGTGTTTTCATTGTCTAGAATCAATAGAGCGGCCTCCATCAGGAGACAACATCAGACCATGGCTAAGAGAAAGACAGTTTTGATGATGGTTAATGAAGTTTATATTGtcaaatagggctgggcgatatggcaaaaaaaaaaaggattatttttttatattggtcTATATTAATAGTTATCACAATAAATGTCAAATCTTTATATGTCAATTTTAAAGGCTTTTCAGCATAAAAATCTCTGTGCGGCTGATTTGgattttgtgaaatgttttagctgtctgacaatgcaaacaaaaaacaacaaccaaagacattacccTACAAGTAGTTGTatattgttcaacatcagaacAAATATAAAGCcggtttgtaacaagtaaaaggtaacagaattgtcagtttttggatgaactgtcctttAAATGGTGAGAATGGTGAATTTAAGGTGAAATATcctttaataaattttatttaggaATGCTAACGATtactgaatgattgattgattgtcaaTTACCCTTTAATCAACAGACCTTATCAatgactgattaagcatggacatttaaaggttaaGTTATGCTTTGTGCTGTGAGATGCATCCAGGCATTACATAATCGTGTGTAGTTTACCTTATCTTATGGAGTCACCCTTTTGACATTGCATACTGCGGGATGCATAAAACCCTGATATGTGCAGATCTTGTCTCACACTTCCGACTTCATTCTTCTGAGGTAATCTAAGAATACTTTCAGTGCTGTGAATAGTTTGTAAAGACTGTACTGGCTCATTCATACCGCTTGATTAAAGAAATTAAACTGAAACCatgaaaacagataaataaattattttgacgCTGAAGCATAAAATGACCTTGTTTTGAAGAGCTTCATTTCAGATGTAATTcgttcttgtttattttgtagataattgACCtacaaaagtaaattaaaatacaaattatacaaaatgattcttttttttcaaaaagatacaatttcaaagaaaaaaatg

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140102 catalytic activity, acting on a rRNA molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065171 lncRNA downstream 36329 29771367 ~ 29790125 (-) False XLOC_032912
TCONS_00065170 lncRNA downstream 36412 29771367 ~ 29790042 (-) False XLOC_032912
TCONS_00065169 lncRNA downstream 36413 29771367 ~ 29790041 (-) False XLOC_032912
TCONS_00065172 lncRNA downstream 36495 29788303 ~ 29789959 (-) True XLOC_032912
TCONS_00065168 lncRNA downstream 45005 29771367 ~ 29781449 (-) False XLOC_032912
TCONS_00065173 lncRNA upstream 15306 29846493 ~ 29848620 (-) False XLOC_032914
TCONS_00065174 lncRNA upstream 15306 29846493 ~ 29848708 (-) False XLOC_032914
TCONS_00065175 lncRNA upstream 15306 29846493 ~ 29848766 (-) False XLOC_032914
TCONS_00065176 lncRNA upstream 15306 29846493 ~ 29848847 (-) True XLOC_032914
TCONS_00065177 lncRNA upstream 20006 29851193 ~ 29860852 (-) True XLOC_032915
TCONS_00063943 mRNA downstream 214185 29476933 ~ 29612269 (-) False XLOC_032909
TCONS_00063947 mRNA downstream 288369 29477812 ~ 29538085 (-) False XLOC_032909
TCONS_00063946 mRNA downstream 288369 29477812 ~ 29538085 (-) False XLOC_032909
TCONS_00063945 mRNA downstream 289235 29477812 ~ 29537219 (-) False XLOC_032909
TCONS_00063944 mRNA downstream 310745 29477812 ~ 29515709 (-) False XLOC_032909
TCONS_00063950 mRNA upstream 293010 30124197 ~ 30210378 (-) False XLOC_032917
TCONS_00063951 mRNA upstream 298796 30129983 ~ 30210378 (-) True XLOC_032917
TCONS_00063954 mRNA upstream 652818 30484005 ~ 30485009 (-) True XLOC_032921
TCONS_00063955 mRNA upstream 794758 30625945 ~ 30658848 (-) False XLOC_032922
TCONS_00063956 mRNA upstream 798806 30629993 ~ 30658755 (-) True XLOC_032922
TCONS_00063938 other downstream 552046 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063931 other downstream 741803 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063923 other downstream 741900 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063930 other downstream 773582 29044997 ~ 29052872 (-) False XLOC_032900
TCONS_00063903 other downstream 2770591 27051342 ~ 27055863 (-) True XLOC_032882
TCONS_00063952 other upstream 371734 30202921 ~ 30203037 (-) True XLOC_032918
TCONS_00063998 other upstream 2478501 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00064000 other upstream 2563315 32394502 ~ 32405841 (-) False XLOC_032943
TCONS_00064015 other upstream 3612147 33443334 ~ 33443455 (-) True XLOC_032953
TCONS_00064019 other upstream 3847190 33678377 ~ 33681084 (-) True XLOC_032954

Expression Profile

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