RNA id: TCONS_00065174


Basic Information

Item Value
RNA id TCONS_00065174
length 1893
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id XLOC_032914
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 29846493 ~ 29848847 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAAGACTTGCAACAGGTATGACAAGGATGAACAAATCCTCAGGTCATTGAACAGGCTAAAATTCAattttcagaattaaaaaaatcaaacctTATATTGATCTTTCACACGCCGGCCTTCGTAAACAGCTCCAAAACCTCCTTGACCCAGCAGATTGCCAACTTCATAGTGGTCAAAGATGTTCATGTCAGACTGGAAACGAACTGGAGCTTCAACAGCATCAGCACTCCAGCCAGACTGGAAACGAACTGGAGCTTCAACAGCATCAGCGCTTCATTCAGACTGGAAATGAACTGGAACTTCAACAGCATCAGCGCTCCAGTCAGACTGGAAACAAACTGGAGCTTCAACAGCATCAGCACTCCTTTCAGACTGGAAGCGAACTGGAGCTTCAACGGCATCAGCGCTCCAGTCAGAGTGTAAGTGAACTGGAGCTTAGTTGCCATCAGCGATTCCATCAGACACAATGCTGATTGCAACATCACTGATGCTGACTGCATCACCAGCAGCTTCAGGAGCATCACTAATGCAGTCAGACACAATGCTGACTGGAGCTTCATGGGTGAGGATgactgtaattaaaataaatacgttttttgaaaaaacaaaaaaacaagcaatgACATCGTCCATCAAAATGTATTAGAAGTATATAAATGTAACCCTTTTTCCTTTTACCCCTGGACTCCAGATAAAAAGAACCTGATAAAAGAGCCTGAGTTCACAAGATTACTTTTAATATATCCACTGATTGTCAGACTAACCTGAACACGTTTAACATAGACTATTATTAGTTATGTACTGCACTCACTAATCACTCAAATACCAACAAGAGACAAAATAAGGACCCATAAACACAATGATTAactataaaaatgtattcaaggtatttcacataaataaaaaacaatatcaatcaataatgtaaaaaaataaaataaaagtgtattattCACATCTAATAGGTTTATATTCTATGCTCAGATGCAGCACAGAAAGACAAAAATCACTTAAGGAATACCAAAATACTGAAAATATGACAATAAACCAATgcgtttttcttattattaaactAAACACAGTAATTTGTATATGCTTGTTCCCttgtgtttttataaattaaaatctcTTCCTAAAGCTATCTCTCTATGTATTAAATAGTAAATTCGCTGCTATAAACCAAACACACGAAATAAACAATAGTTTAACCCTCCCGTAAACTTGACTTTaacaatacaaatgaaataaCGTTACTGTTATAACAGAATTTGAAAGAAAAACCTTTTGACCAGTCACTTTAGGGCTATGTGGATCCACActcacactctcatacacacacacaaacacaaaaacctaAACCCCGTTGCAGGCCTGACGTGCAGCTTGAGTTCGTTGTGGCccagaaacaaacaaatggccCCTTCGCTCAACCGAGCAAACAAAATAAAGGTACCTTAATTATCAGATGAGAAAACGAGGCTCACGCAGGTGTAACCTGAAACCATCCAACGCCAAACTCGCTGTCCAACGATGCTCGCAGACTGGTTGAGCCCACGACACTCACTGCTGTTAGATGAGCTTCTGCTCCCCGTGATGCTTCCAGCAAGTTCGTTATCCAGTTCACATCCAGTTTTCAGTTTGTAAGGGTTTCGAACCAATTTTAGTGAGTAAAGTCCTGTGAAGAACTTTCCTTATGCAAAAAGACAACTCAAACTGTTTCTCACTCACTCCACAAGTCAGATCTTCTTTCAGTTTCTTTATAGCAACGTGTGTGTGCTGCTAAACACTTTAAATATGAACTTAAAAGGAATATCACAGACTTTATGGTCTAAAATCTACAAACTTCCCGATCACTCACGCACTGCGTGTgactttttttccctctctcccgG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064746 lncRNA downstream 15306 29826454 ~ 29831187 (-) False XLOC_032913
TCONS_00063949 lncRNA downstream 15306 29826454 ~ 29831187 (-) True XLOC_032913
TCONS_00064745 lncRNA downstream 15345 29826454 ~ 29831148 (-) False XLOC_032913
TCONS_00065171 lncRNA downstream 56368 29771367 ~ 29790125 (-) False XLOC_032912
TCONS_00065177 lncRNA upstream 2485 29851193 ~ 29860852 (-) True XLOC_032915
TCONS_00064747 lncRNA upstream 235238 30083946 ~ 30085602 (-) True XLOC_032916
TCONS_00063953 lncRNA upstream 373126 30221834 ~ 30221970 (-) True XLOC_032919
TCONS_00065178 lncRNA upstream 603579 30452287 ~ 30456089 (-) False XLOC_032920
TCONS_00065179 lncRNA upstream 603579 30452287 ~ 30459015 (-) True XLOC_032920
TCONS_00063943 mRNA downstream 234224 29476933 ~ 29612269 (-) False XLOC_032909
TCONS_00063947 mRNA downstream 308408 29477812 ~ 29538085 (-) False XLOC_032909
TCONS_00063946 mRNA downstream 308408 29477812 ~ 29538085 (-) False XLOC_032909
TCONS_00063945 mRNA downstream 309274 29477812 ~ 29537219 (-) False XLOC_032909
TCONS_00063944 mRNA downstream 330784 29477812 ~ 29515709 (-) False XLOC_032909
TCONS_00063950 mRNA upstream 275489 30124197 ~ 30210378 (-) False XLOC_032917
TCONS_00063951 mRNA upstream 281275 30129983 ~ 30210378 (-) True XLOC_032917
TCONS_00063954 mRNA upstream 635297 30484005 ~ 30485009 (-) True XLOC_032921
TCONS_00063955 mRNA upstream 777237 30625945 ~ 30658848 (-) False XLOC_032922
TCONS_00063956 mRNA upstream 781285 30629993 ~ 30658755 (-) True XLOC_032922
TCONS_00063938 other downstream 572085 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063931 other downstream 761842 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063923 other downstream 761939 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063930 other downstream 793621 29044997 ~ 29052872 (-) False XLOC_032900
TCONS_00063903 other downstream 2790630 27051342 ~ 27055863 (-) True XLOC_032882
TCONS_00063952 other upstream 354213 30202921 ~ 30203037 (-) True XLOC_032918
TCONS_00063998 other upstream 2460980 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00064000 other upstream 2545794 32394502 ~ 32405841 (-) False XLOC_032943
TCONS_00064015 other upstream 3594626 33443334 ~ 33443455 (-) True XLOC_032953
TCONS_00064019 other upstream 3829669 33678377 ~ 33681084 (-) True XLOC_032954

Expression Profile

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