RNA id: TCONS_00065179


Basic Information

Item Value
RNA id TCONS_00065179
length 1137
lncRNA type read_through
GC content 0.38
exon number 2
gene id XLOC_032920
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 30452287 ~ 30459015 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttatttCAAAAGGCAGCGGGTATTTTATAGACAAGCACTGGAATAAAATTATATAGTTTAGGCAAGTCTCTGATATTCTTCAAACAACAGAATACTTAGTCAGCTCTAACTCTGAAGTTACAATGCATTTTAAGGTGATATACACATCTATAAAAAGCGTGCAGACTAAAGTGGTAGTTCGCCTGGctaaaaataaagtgaaagagTACAATCTTAGCCTGCACTAGTTATATACAAAGATTCAAAAGgctaaaataaattactaaaaaatatcaatgaattatttttttaacaggacCAGGATGGTGACACAAGTCATTTGAAATAATGCACCACCAAAATCTCATTTTCAGAAGTTAATTACAACCTCCTGGTGTAAATAGCAACACAACTTGCATGTGCAAAGCTTGGATGGAAAATGAACGGAACTGAGATTTGAAGATTTTCTATTGGGATTCAGGTCTTtcactgccctctagtggtttAAAACAAGAATAAGAGTTCACGTGGATCCAAAAAACGTCAAGGAATTGAATGAAAGGTGtttaaaaatgatgatgatgattattatgattTCGCCATATAATTTTATGGGTCGTGTAACATTAAAGGTTTACGAACGCATTAAAATCACTATAGAGGATAACAACGACTTTCTATAAAATCAGGTTTGGTCAAATCATGATGTGAACATCTGAACATGCCCAGCACTTTCAGGATCTTCACAAGTCTTGCCAAAATGTCTGAGGCAGTAAAGGAGTACTCAATATATGACCTGAATGCAATTCCGCTGGCAGTAAGTGGACCACATTATTAAGTACTGCTTTGGAATCCTAGGCTGACGTCAAGAGAGACTGGCTCTAGATCAGTGTTTATTAATCAGTCAGTTGATTATTCTCTGGTCCATTGGGAGACTGTCCATCAGACACTTGAGCTGCTCATCTCCCAGTTTGATCTTGTCCTCCAGCTTGCGTTGCTCGATAATAAGAGCGGATTTCATCTTGACAAAGTGCTCGTAGTCAGCCATACTCTCCTCAGGCAGGTAACTGGCCAGAATGTCGTAGACCACACGCTCTCTCCTGTCCAGGTTCTCCTTCAGCTCCTTAGCATCCTCGTGCTGACGAATCAGCAGTTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063953 lncRNA downstream 230317 30221834 ~ 30221970 (-) True XLOC_032919
TCONS_00064747 lncRNA downstream 366685 30083946 ~ 30085602 (-) True XLOC_032916
TCONS_00065177 lncRNA downstream 591435 29851193 ~ 29860852 (-) True XLOC_032915
TCONS_00065176 lncRNA downstream 603440 29846493 ~ 29848847 (-) True XLOC_032914
TCONS_00065175 lncRNA downstream 603521 29846493 ~ 29848766 (-) False XLOC_032914
TCONS_00063964 lncRNA upstream 396867 30855882 ~ 30868761 (-) True XLOC_032926
TCONS_00063965 lncRNA upstream 610515 31069530 ~ 31147255 (-) True XLOC_032927
TCONS_00063976 lncRNA upstream 844305 31303320 ~ 31305958 (-) True XLOC_032929
TCONS_00065180 lncRNA upstream 1286276 31745291 ~ 31749784 (-) True XLOC_032933
TCONS_00063990 lncRNA upstream 1570898 32029913 ~ 32034640 (-) False XLOC_032937
TCONS_00063950 mRNA downstream 241909 30124197 ~ 30210378 (-) False XLOC_032917
TCONS_00063951 mRNA downstream 241909 30129983 ~ 30210378 (-) True XLOC_032917
TCONS_00063947 mRNA downstream 914202 29477812 ~ 29538085 (-) False XLOC_032909
TCONS_00063946 mRNA downstream 914202 29477812 ~ 29538085 (-) False XLOC_032909
TCONS_00063945 mRNA downstream 915068 29477812 ~ 29537219 (-) False XLOC_032909
TCONS_00063954 mRNA upstream 24990 30484005 ~ 30485009 (-) True XLOC_032921
TCONS_00063955 mRNA upstream 166930 30625945 ~ 30658848 (-) False XLOC_032922
TCONS_00063956 mRNA upstream 170978 30629993 ~ 30658755 (-) True XLOC_032922
TCONS_00063957 mRNA upstream 217980 30676995 ~ 30683637 (-) True XLOC_032923
TCONS_00063958 mRNA upstream 225681 30684696 ~ 30689126 (-) True XLOC_032924
TCONS_00063952 other downstream 249250 30202921 ~ 30203037 (-) True XLOC_032918
TCONS_00063938 other downstream 1177879 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063931 other downstream 1367636 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063923 other downstream 1367733 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063998 other upstream 1850673 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00064000 other upstream 1935487 32394502 ~ 32405841 (-) False XLOC_032943
TCONS_00064015 other upstream 2984319 33443334 ~ 33443455 (-) True XLOC_032953
TCONS_00064019 other upstream 3219362 33678377 ~ 33681084 (-) True XLOC_032954
TCONS_00064020 other upstream 3267032 33726047 ~ 33726148 (-) True XLOC_032955

Expression Profile

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