RNA id: TCONS_00063967


Basic Information

Item Value
RNA id TCONS_00063967
length 3268
RNA type mRNA
GC content 0.47
exon number 18
gene id XLOC_032928
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 31184058 ~ 31233696 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTTTTTTCAGATGTCCTCTCTTGTCCTCCTAGGTCTGTCTTCATCATGCTTGCACTGCTTGTGATTTTTATTGCCGTTTCACAAGGCCTTGCAGATTTGAATCCTTCTGATGGAGTCAGCGATGGTGTTTACGAAGACCTGAAGTGGAAAGCTCTCCTGTGTTGTGATCATCCTGTTCAGACGCTTAACAGTGGTCTTTCAGAACACCCACCCGAACAACACTGCCAACTGCTAAATGCTACAAAACAACAGTCTTTTGgaagctgtttggacatccTGTGCTGGCTTGAAGGTGAACGGGAAAATTTGATTTGTAATGCAAAGACCCGTAGAGCAGCAGCAGCTTCCACTCTGGTCAGCGTCAGCCCTCATCAATTAGTtgTACAGATGGATGTACATTCAGATGAAGCAAATTCCACTGCTCAGTGTGTTGGAGAAGAGACTGCCATCTGCTCCGTTTCTCTTCACGGCGGGGATGCAACAGTCTCATTAGTTATAATTATATCTGAGAATGGGACCACTGCACAATCACAGAAGATGCAAGTCAGCACATATGAACTACaagcaggagacccgtcgagagaacttaaaccctctcctctttcaatgaagtcgccagtgtttaagcattttggatttccagtaagttatgttgacaacgttcgtgttgtcgacaaaaaaaacacagttttgcaagctctgctatGTATTGAAGGTCAAAGGTCGTTCATGGGTTGCTCTGAATGAGCTCAGTTCTGACATCAGATACACGGTTCAAGTGCGCTGCCAAAACCATCTCGGCTACTGGAGTGAATGGAGCCAACCTTTCTATTTCAAACTAGATGTCAGTTACATCCCTGCTGAAGTCTTCACAACGCAGGAGTCAGAGGTGACAGTTTACTCTGTGTTCCACAACCGCAGCTGGAGCGCCAGTAAAGCCGTGTGGTTTCTGAACGGCAAGATGAAGATACCAGAAAGCCAGTACAGAGTCATCAATGAGCAGGTCAGCACAGTCACTCTAAAGATGGACAAAGCAGGATTTGACACTCTGATGTGCTGCCTCACATTGGGAGAGAAATCTATGTGCTCCATCGCCTATGCCAAAATATACACAGAAGGAAGGTTTAACGCAAATATTACCTGCGAAAGCGAGTATTCATATGTGGACACCATGATCTATGCATATGGGTGTCGTAGACAATACAGATCAAAGTGCACTGAAGAAGCTGAAGAAGACACGTCTTTGGTGAAAGAGTGTCCATCTAAAGCAGGAGATCACAGACAGTGCACCTTAAGCCAAATCAGCATGATCTTTTGCTATAAATTCTGGCTTGAAGTGGAAGGAGGACGTGGCCAATCGTTTCCTGTCTACGTTACGCCTATTGACTATGTGAAACCGTCACCTCCCTTTGATCTGGAGGCAATCACTCTGCCGAGTAAAACCCTGAGTGTAAGGTGGAAACGCCCCTCTTTGCCTGTATACGGCATGCAGTACGAGCTGCAATTCAAGGCTTTGGCTGGAATGGCAAATACGCAATGGAAGGTCATTGGTCCTCTATTGGAACCACAGGCAGAGATTCAGCTTGAGGAGTCCTGTGTTCACTTTAAAGTAGAAGTTCGCTGTAAAGACGTGAACGACACTGGATACTGGAGCGACTGGAGCAATAGTCACATTTCCACTGTTTTCAACTTGAAagCACCAGAGATGGGACCAGACTTCTGGCGCATTTTACAAGAGGATCCTACTAGGAATGTGACAAACGTTACACTGATCTTTAAGcaGCCCATTCTAGCAGGAGATCCAAATAGCTGCGTGGAGGGTTTAGTGATTAAACACCAGGCCTCAGGTGGAGTCATGTGGTCAAATGAAACAACCTTGGCTCGGTTTCACTCATTCCAGTGGAGGAAGGAAGCGCATACAGTCACTGTGATGTCTCGCAACGCTTTGGGCATTTCCACATGGAACAGAAACATCACGCTCTTACGTCAAGCCAAACggcGATGTGTGCGTTCGTTCAGTGCAGTTGCAAATGTGAGCTGTGTGCACCTCTCCTGGAGCCTGTTATCTGATCAGCCGGTGCCTCAGTCATTTGTTATTGAATGGTTAGACCTGAACAAAGACCCCGAAAAGGATGTGTCTCTCACAGAAAGAATACAGTGGGTCAGGGTTGAGTCCAGATCGAGAGATCTTTCTCTTTGCCCACGTGCTAAGCATCCTGAAAGAAAAGAAAGTCCTCTCGTCTTTGacaatataatttgtttttatgcaGGTCGTTTTTATGGCTCAGAGGAGTTCACCTTGTATCCAGTGTTTGCGGATGGTGAAGGGGAACCGGCTCGATACACAGCTACAAGGGGTGATCCTGCAGCGTATATACTGCTACTGATCATCGCCTTCCTGTCAGTGGTGCTGTTTGTCACACTGATGATGTCACAGAACCAGATGAAAAAACTCATGTGGAAGGATGTTCCAAATCCCAACAAGTGCTCTTGGGCCAAAGGAATGGACTTCAGGCAGATTGACACCATGGAGAGCCTGTTCCCTCATTCAGAGGGTCTCACTGCCTGTCCATTGCTGCTTGTCTCCGAGAGCATCTGTGAGGTTGAAATCATCGAGAAACCTCATCCTCTTACCATTGAAAACGTAAAAGACAATGAAGAACTTCCCTCCGGGGACAAGACAACCACAGACTCTGGCCTTCAGGGAGACTCTTCTGAAGCTCTGGAAGCATCTACTGCTGCTCCCACTCCAGAAACATCAGGCCAGTCTTCAGTCACGTACTCCACCATCCTCCTCTCCGACCAGCCCAGCCAACTCCAAAAGCAGCAGGAGAGTCTCAGCAGCTCCAGTGACGAAGGCAACTTCTCTGCCAACAACTCGGACATTTCCGGCTCCTTCCCTGGAGGACTTTGGGACTTGGAGAACAGCAATCCTCGCCATTCCAGCTCCTACAACTCTGTGGAGGAGTTTTCGGAAACATCAGAACCTGATTATGAAGCTTCGGAAAACACAGGTTTAGCTAAAGACCTCTATTACCTCGAGATGACCGGAGaggagaaagaagaagaagaagaagaagaagaagaagaagaagaagaagacgaacCAGAGGAGGGTCAAAGTAAGAATAAAAGAGTGATGGGTGTAAACCCCAGGCCTCTACTGGAAAGCCAAAATTCCACAGCCAGCAATTCCAATAACATGTCTCACAGCATTCCTCTTTATCTGCCTCAGTTTCGAAGTGAATGTATCAATCCAACGTGA

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0043010 camera-type eye development biological_process
GO:0048839 inner ear development biological_process
GO:0007399 nervous system development biological_process
GO:0009749 response to glucose biological_process
GO:0003323 type B pancreatic cell development biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0038021 leptin receptor activity molecular_function
GO:0004896 cytokine receptor activity molecular_function
GO:0019955 cytokine binding molecular_function

KEGG:

id description
ko04630 JAK-STAT signaling pathway
ko04152 AMPK signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04060 Cytokine-cytokine receptor interaction
ko04920 Adipocytokine signaling pathway
ko04932 Non-alcoholic fatty liver disease
ko04050 Cytokine receptors
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-080104-1 Predicted to enable cytokine binding activity and cytokine receptor activity. Acts upstream of or within several processes, including response to glucose; sensory organ development; and type B pancreatic cell development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in several structures, including digestive system; musculature system; nervous system; notochord; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); non-alcoholic fatty liver disease (multiple); obesity; obstructive sleep apnea; and type 2 diabetes mellitus. Orthologous to human LEPR (leptin receptor).

Ensembl:

ensembl_id ENSDART00000104616

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063965 lncRNA downstream 39128 31069530 ~ 31147255 (-) True XLOC_032927
TCONS_00063964 lncRNA downstream 317622 30855882 ~ 30868761 (-) True XLOC_032926
TCONS_00065179 lncRNA downstream 727368 30452287 ~ 30459015 (-) True XLOC_032920
TCONS_00065178 lncRNA downstream 730294 30452287 ~ 30456089 (-) False XLOC_032920
TCONS_00063953 lncRNA downstream 964413 30221834 ~ 30221970 (-) True XLOC_032919
TCONS_00063976 lncRNA upstream 78757 31303320 ~ 31305958 (-) True XLOC_032929
TCONS_00065180 lncRNA upstream 520728 31745291 ~ 31749784 (-) True XLOC_032933
TCONS_00063990 lncRNA upstream 805350 32029913 ~ 32034640 (-) False XLOC_032937
TCONS_00063991 lncRNA upstream 810724 32035287 ~ 32037999 (-) True XLOC_032937
TCONS_00063995 lncRNA upstream 971245 32195808 ~ 32196825 (-) True XLOC_032940
TCONS_00063960 mRNA downstream 232115 30851545 ~ 30954268 (-) False XLOC_032926
TCONS_00063961 mRNA downstream 254305 30853868 ~ 30932078 (-) False XLOC_032926
TCONS_00063963 mRNA downstream 323337 30854926 ~ 30863046 (-) False XLOC_032926
TCONS_00063962 mRNA downstream 326727 30853971 ~ 30859656 (-) False XLOC_032926
TCONS_00063959 mRNA downstream 346620 30709926 ~ 30839763 (-) True XLOC_032925
TCONS_00063968 mRNA upstream 54979 31279542 ~ 31348999 (-) False XLOC_032929
TCONS_00063969 mRNA upstream 59178 31283741 ~ 31323984 (-) False XLOC_032929
TCONS_00063971 mRNA upstream 59178 31283741 ~ 31324113 (-) False XLOC_032929
TCONS_00063970 mRNA upstream 59178 31283741 ~ 31324113 (-) False XLOC_032929
TCONS_00063972 mRNA upstream 59178 31283741 ~ 31325400 (-) False XLOC_032929
TCONS_00063952 other downstream 983346 30202921 ~ 30203037 (-) True XLOC_032918
TCONS_00063938 other downstream 1911975 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063931 other downstream 2101732 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063923 other downstream 2101829 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063998 other upstream 1085125 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00064000 other upstream 1169939 32394502 ~ 32405841 (-) False XLOC_032943
TCONS_00064015 other upstream 2218771 33443334 ~ 33443455 (-) True XLOC_032953
TCONS_00064019 other upstream 2453814 33678377 ~ 33681084 (-) True XLOC_032954
TCONS_00064020 other upstream 2501484 33726047 ~ 33726148 (-) True XLOC_032955

Expression Profile

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