RNA id: TCONS_00063973


Basic Information

Item Value
RNA id TCONS_00063973
length 2649
RNA type mRNA
GC content 0.52
exon number 21
gene id XLOC_032929
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 31279542 ~ 31348999 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGATTAGGGTGTCATGCCAGATGCTCCAAGTTTCCTCCATTTCCTACTGCCCTCCGTCTCCAGATATGGACGGGAACTATGGAGGGGGGCTTCTGGATATGGTGAAAGGAGGTGCTGGAAAGTTCTTCAGTAACATCAAGGACAACCTCAAAGACACCATCAAAGACACCTCCACCAAGGTTATGAACCAAGTGGCCACGTATACAAAAGGGGAGTTGGACATTGCCTACATCACCTCACGTATTATCGTGATGTCATATCCTGCTGAGACGGTGGAGATGGGCTACAGGAACCACACAGAGGATATCCGCTCTTTTCTGGACTCACGGCATGCTGACCACTACACTGTTTTCAACCTGTCACAGAGGAACTATCGAGGAGCCAAGTTCTCCAACAGAGTTTCTGAATGCAATTGGCCGTCCAGACAGGCTCCAAGTCTTCACAACCTATTTGCCGTGTGTAAGAATATGTACAACTGGCTCAAGCAAAACCCCAAGAATGTGTGTGTAATCACCTGTTCGGATGGCAGAGCTCCTTCAGGCGTGCTGGTCTGTGCCATGTTCTGTTTCTGCCATCTTTTCGCCAACCCGGTGCCAGCCATGCAGCTTCTCAgcgccaagaggcctggatctgGCCTGTGGCCCTCCCATAGGAGgtaCATAGGTTATGTATGCAGTTTAGTCTCAGAGAAGCCCACCGTACCCCACTCCAAACcactagttattaaaactgtcacAATCAGTCCTGTTCCCTGCTTCAACAAACAGCGCAGTGGCTGTCGGCCATTTTGTGATGTACTAATTGGTGAGACCAAGATATTTTCTACAGCTCAGGAGTACGAGAGAATGAGAGAACACAGGATTCAGGAGGGCAAAGTGGTGTTTCCTGTGGGAGTGAGCGCACAAGGAGACGTGGTGATTTCAGTCTATCACATGCGCTCTCATGCACTTCAGGCCAAGGTAACAAACACCCAGATATTCCAGATTCAGTTCCACACTGGTTTCATTGCCCCTGGCAGCACAGTCTTGAAGTTTATGAAGACAGAGCTGGATGCCTGTGATTCTCCAGAGAAATACCCACAGCTGTTTCATGTGCTGATAGATATCGAGGTTGAAAGCACGGAGAAACAGAAAGATCTCACTCCACCATGGGAACAGTTTCCCACCAAAGACCTGAGCCCCAATGTGCTCTTCTCCTGCCATCAGGAACACCAGGATGCACTTGCTATTGCAGTCAACTCATCAGTCATTTGCTGGCAGTCTGTAGAGTATTTCAGTTGCGGAGGCAGAGTGGGGCCGAATGAAGAGAGCGAACCATCTGATGATGAGATGCTGTCCCTTTCTAGCCAGCAGAGCAACGCGAGTAATGAGAAATCAAAAGCAGCTAAAAGGCCAGAGCCGCAGGCCGCAGCGCCGCCTCCTCCAGCAGCTGAGGAAGTGGATCTTCTGGGTCTGGATGGAGACGCTGCTAAAATTCCTCCATCCTCCCCTCAACCCCCAGCCAACAACACTACCACAGACCTGCTGGGGGATCTGTTTGGAGCTCCACCAACACCACAGCCAGCCAGCTGTCCAGGCTCTGCTCAGTCCACGCCGCGGAGATCCGCACAGTCCTCCTCACCCGGACCTTCACCCCGATCTGGAAACACTTTCGACCCGTTCGGGTCTGGGCCCGCTCCTGCCCCTAAGCCACAGGATTTCATGGGTGCGTTCCTGGGTCCAGGTAATATGGGGCAGCCAGACCCCTTCCTGCATGCTGCACGATCTCCGTCTCCTACAATGCAGAACATGGGCATGGGTAAGGCATGTGGAGGTTTTGGGATGGGCAGTAAATCAGCCAGTACTAGTCCAACAAGCTCAGCCCATGGTACACCCACCCACCAGACCAAACCGAACACTCTTGACCCTTTTGCTGATCTGGGGAACCTGGGAGCAGGATTTTCCAGCAAACCCACAACACCGACTGGAACTGGAGGTGCATTTCCACCAATGGGCTCCCCCCAGCGTCCCGCACCCTCCCCCCAGCACACCGCATCTGGAGGCTGGCATCCCAACACCGCTCAGTGGCAGCCACAGGCTCAGGGGACTCCAACTAAAGCACCCCCAGCATCCATGCCACACACTTCACCACAGAACAGACCCAACTACAATGTCAGCTTCTCTGCCATGAGCGGAGCATCGCCTGGAGCCGCTGGtccgactaaagtcataaataatcaaactaaacagaaattgaagacatATGCTAACTTTGATGACCTGCTCTCAGGCCAGGGCTTTGCTGGCGGTAAAGAGAAGAAGGGACCAAAAACCATAGCAGAAATGAGAAAAGAGGAGATGGCAAAAGAAATGGACCCAGAGAAACTCAAGatCCTGGACTGGATTGAAGGGAAGGAGAGGAATATCAGAGCGCTGCTGTCCACCATGCACACAGTGCTTTGGGAAGGGGAGACCCGCTGGAAACCTGTAGGCATGGCTGACCTCGTCACACCAGAGCAGGTCAAGAAGGTCTACCGCAAAGCTGTGCTGGTAGTTCACCCTGACAAGGCTACTGGACAGCCCTACGAACAATATGCCAAGATGATTTTTATGGAACTAAATGATGCCTGGTCGGAATTTGAGAGCCAAGGACAGAAAGCTCTGTACTAA

Function

GO:

id name namespace
GO:0006898 receptor-mediated endocytosis biological_process
GO:0016191 synaptic vesicle uncoating biological_process
GO:0072583 clathrin-dependent endocytosis biological_process
GO:0072318 clathrin coat disassembly biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005829 cytosol cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0031982 vesicle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030276 clathrin binding molecular_function

KEGG:

id description
ko04144 Endocytosis
ko03041 Spliceosome
ko03110 Chaperones and folding catalysts
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-080104-2 Predicted to enable clathrin binding activity. Predicted to be involved in clathrin-dependent endocytosis and synaptic vesicle uncoating. Located in cytosol and perinuclear region of cytoplasm. Is expressed in hindbrain; inner ear; neural rod; otic vesicle; and spinal cord. Human ortholog(s) of this gene implicated in Parkinson's disease and Parkinson's disease 19A. Orthologous to human DNAJC6 (DnaJ heat shock protein family (Hsp40) member C6).

Ensembl:

ensembl_id ENSDART00000190749

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063965 lncRNA downstream 136486 31069530 ~ 31147255 (-) True XLOC_032927
TCONS_00063964 lncRNA downstream 414980 30855882 ~ 30868761 (-) True XLOC_032926
TCONS_00065179 lncRNA downstream 824726 30452287 ~ 30459015 (-) True XLOC_032920
TCONS_00065178 lncRNA downstream 827652 30452287 ~ 30456089 (-) False XLOC_032920
TCONS_00063953 lncRNA downstream 1061771 30221834 ~ 30221970 (-) True XLOC_032919
TCONS_00065180 lncRNA upstream 418893 31745291 ~ 31749784 (-) True XLOC_032933
TCONS_00063990 lncRNA upstream 703515 32029913 ~ 32034640 (-) False XLOC_032937
TCONS_00063991 lncRNA upstream 708889 32035287 ~ 32037999 (-) True XLOC_032937
TCONS_00063995 lncRNA upstream 869410 32195808 ~ 32196825 (-) True XLOC_032940
TCONS_00064003 lncRNA upstream 1088678 32415076 ~ 32416732 (-) False XLOC_032944
TCONS_00063966 mRNA downstream 50045 31184058 ~ 31233696 (-) False XLOC_032928
TCONS_00063967 mRNA downstream 59178 31186383 ~ 31224563 (-) True XLOC_032928
TCONS_00063960 mRNA downstream 329473 30851545 ~ 30954268 (-) False XLOC_032926
TCONS_00063977 mRNA upstream 23703 31350101 ~ 31361277 (-) False XLOC_032930
TCONS_00063978 mRNA upstream 25747 31352145 ~ 31364475 (-) False XLOC_032930
TCONS_00063979 mRNA upstream 25752 31352150 ~ 31361546 (-) False XLOC_032930
TCONS_00063980 mRNA upstream 27177 31353575 ~ 31364551 (-) True XLOC_032930
TCONS_00063981 mRNA upstream 104393 31430791 ~ 31576397 (-) True XLOC_032931
TCONS_00063952 other downstream 1080704 30202921 ~ 30203037 (-) True XLOC_032918
TCONS_00063938 other downstream 2009333 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063931 other downstream 2199090 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063923 other downstream 2199187 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063998 other upstream 983290 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00064000 other upstream 1068104 32394502 ~ 32405841 (-) False XLOC_032943
TCONS_00064015 other upstream 2116936 33443334 ~ 33443455 (-) True XLOC_032953
TCONS_00064019 other upstream 2351979 33678377 ~ 33681084 (-) True XLOC_032954
TCONS_00064020 other upstream 2399649 33726047 ~ 33726148 (-) True XLOC_032955