RNA id: TCONS_00063976


Basic Information

Item Value
RNA id TCONS_00063976
length 560
lncRNA type retained_intron
GC content 0.39
exon number 3
gene id XLOC_032929
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 31279542 ~ 31348999 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAAGGAGACGTGGTGATTTCAGTCTATCACATGCGCTCTCATGCACTTCAGGCCAAGGTAACAAACACCCAGATATTCCAGATTCAGTTCCACACTGGTTTCATTGCCCCTGGCAGCACAGTCTTGAAGTTTATGAAGACAGAGCTGGATGCCTGTGATTCTCCAGAGAAATACCCACAGCTGTTTCATGTGCTGATAGATATCGAGGTTGAAAGCACGGAGAAACAGAAAGATCTCACTCCACCATGGGAACAGTTTCCCACCAAAGACCTGAGCCCCAATGTGCTCTTCTCCTGCCATCAGGAACACCAGGATGCACTTGCTATTGCAGGTAcagtacaaacacacactttataatctttataggcaaggcaagttttttctatagcacatttcacacacaatagttatccaaagtgctttacataaacaggagtaaaaaaagacaagtataagaaaataaaaataaataataaaagtgattaaaaacagaataaaatgtgttaaaacaggttctaaaagaatgaaaaagaaaaaaaaagatataatggtgtgatct

Function

GO:

id name namespace
GO:0006898 receptor-mediated endocytosis biological_process
GO:0016191 synaptic vesicle uncoating biological_process
GO:0072583 clathrin-dependent endocytosis biological_process
GO:0072318 clathrin coat disassembly biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005829 cytosol cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0031982 vesicle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030276 clathrin binding molecular_function

KEGG:

id description
ko04144 Endocytosis
ko03041 Spliceosome
ko03110 Chaperones and folding catalysts
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-080104-2 Predicted to enable clathrin binding activity. Predicted to be involved in clathrin-dependent endocytosis and synaptic vesicle uncoating. Located in cytosol and perinuclear region of cytoplasm. Is expressed in hindbrain; inner ear; neural rod; otic vesicle; and spinal cord. Human ortholog(s) of this gene implicated in Parkinson's disease and Parkinson's disease 19A. Orthologous to human DNAJC6 (DnaJ heat shock protein family (Hsp40) member C6).

Ensembl:

ensembl_id ENSDART00000156106

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063965 lncRNA downstream 156065 31069530 ~ 31147255 (-) True XLOC_032927
TCONS_00063964 lncRNA downstream 434559 30855882 ~ 30868761 (-) True XLOC_032926
TCONS_00065179 lncRNA downstream 844305 30452287 ~ 30459015 (-) True XLOC_032920
TCONS_00065178 lncRNA downstream 847231 30452287 ~ 30456089 (-) False XLOC_032920
TCONS_00063953 lncRNA downstream 1081350 30221834 ~ 30221970 (-) True XLOC_032919
TCONS_00065180 lncRNA upstream 439333 31745291 ~ 31749784 (-) True XLOC_032933
TCONS_00063990 lncRNA upstream 723955 32029913 ~ 32034640 (-) False XLOC_032937
TCONS_00063991 lncRNA upstream 729329 32035287 ~ 32037999 (-) True XLOC_032937
TCONS_00063995 lncRNA upstream 889850 32195808 ~ 32196825 (-) True XLOC_032940
TCONS_00064003 lncRNA upstream 1109118 32415076 ~ 32416732 (-) False XLOC_032944
TCONS_00063966 mRNA downstream 69624 31184058 ~ 31233696 (-) False XLOC_032928
TCONS_00063967 mRNA downstream 78757 31186383 ~ 31224563 (-) True XLOC_032928
TCONS_00063960 mRNA downstream 349052 30851545 ~ 30954268 (-) False XLOC_032926
TCONS_00063961 mRNA downstream 371242 30853868 ~ 30932078 (-) False XLOC_032926
TCONS_00063963 mRNA downstream 440274 30854926 ~ 30863046 (-) False XLOC_032926
TCONS_00063977 mRNA upstream 44143 31350101 ~ 31361277 (-) False XLOC_032930
TCONS_00063978 mRNA upstream 46187 31352145 ~ 31364475 (-) False XLOC_032930
TCONS_00063979 mRNA upstream 46192 31352150 ~ 31361546 (-) False XLOC_032930
TCONS_00063980 mRNA upstream 47617 31353575 ~ 31364551 (-) True XLOC_032930
TCONS_00063981 mRNA upstream 124833 31430791 ~ 31576397 (-) True XLOC_032931
TCONS_00063952 other downstream 1100283 30202921 ~ 30203037 (-) True XLOC_032918
TCONS_00063938 other downstream 2028912 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063931 other downstream 2218669 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063923 other downstream 2218766 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063998 other upstream 1003730 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00064000 other upstream 1088544 32394502 ~ 32405841 (-) False XLOC_032943
TCONS_00064015 other upstream 2137376 33443334 ~ 33443455 (-) True XLOC_032953
TCONS_00064019 other upstream 2372419 33678377 ~ 33681084 (-) True XLOC_032954
TCONS_00064020 other upstream 2420089 33726047 ~ 33726148 (-) True XLOC_032955

Expression Profile

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