RNA id: TCONS_00063988


Basic Information

Item Value
RNA id TCONS_00063988
length 2377
RNA type mRNA
GC content 0.42
exon number 13
gene id XLOC_032937
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 32029231 ~ 32045983 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGAACTGCGCACAGCTGGGTAGAGTTTGTTTACACAACAGCCATGGCAATCAGACTCAATAGTGAACATCACCGATAATACAAAAAGGTTACAGCTTCGGCTCTCTAGCTCACTGTTATCATTACAGCATGACGTTTCGATAGCATATTGACTATATTTTCATAATGCCGCGCTCGGAGGAGGAGAGGTTTTATATGACATGCAGGGCTGCTTATCTGTCTGTGTTCAGATCCAGCCTGGTTAATATGACTTCAAAAGATCAGCTGTGCACGGTTCTTCAGCAAGCAGGTAGAAACCCGTCACAGAAAGCTTTAGACAAATACTGGCCACCTGGAACCAAGAAGCTGAATTTTGATGATTTTTGTGAGATactgaaaaaggaaaaaacagcAGAACCAGACCAGCTCATGACAATTTTCAAGAAATTTGACACAAATGGTGATGGATATATTTCACACGATGAGCTTAGCAGAATCCTTACTTCAtctGGCGAAAAAATGTCACATAAAGAAGTGGATGAAATCTTTACTTTAGCAGATGTCAACAAAGATGGAAAATTAGACTACGCAGAGGTatggtttacaattttttttatgagTAGGGTTGTAGAGAAATGTCAAGCAGCAGCACTGGAGAAGCTCGAGGCTGATGTCAAACTGAAGAGGCAGAACTTTGGCAGCCAGCTGAACACTCCACAGAGCTTAGAGTCCCAACCTGAGCCTCCATCTTCAGAATCGCAGCACAGAACAGAGCTGGAGCCCACGCAGAAGAAAGATCGCTCATTATCCAGACCATCATCAGCTCGCAGTCGACGGTCATCTTCATCCACAGCTATCACTATGGGCATCGGTGGCATTAAGACTGGCAGACTGGCAGAACCCAAATCTTTACAGGATTGGCATCATACTTTTATGAGAGGCTGTTTTTATATGGAAGACGATGGATCGATTATTTCTCTCCAGTATCGCCTCCATGTTCCTCAAACTACCAGTGTCTACCTGACCATACAACCCCTCAACCTTAGCCCGATTCCTGACAAGCCTTCACCATGGATGTGTGTGGACACAGCTCTCTATGTGCTGACGGGAAACGAGACAAAAGAAGATTCAAACTTGGTTTGTTTTACCGAGTTAAGAGATAAGGAGAGGTTTTTGTGGAGGGGAGAGCTCAGCGCCGGCTCATATCTGCTTATGCCCTTCACCACCGGCTGCAGACTGAAGAGAATGCGGAAGAACAGCCCTAAAACTGCTCAACTAGTCAACCGCGTGCAGTCTGGAGAGCTGGAGCTAACCAAAGAGTTCAAGGCGGTGTTGTCTGACATCTTTGAAGTGATTGATTTGGATGGCAGTGGTCTGCTGAGTCTAGAAGAATACAATTTCTTTGAGCAGAGAACCAGTGGAGAGAAATGTGATGAGGATGCGTGGGCTATCTGTAAAGAAAACTTCGACACTAAGAAAAATGAGTTAACTAGACAAGGTTTCTTGGAGCTTAACCTGATGGAGGCGAATGATCGCGAGGGAGACCCTAGTGACTTGTGGCTCACCCTGGAGGCCATGGGCTACAACCACAGCTTGGAGATGGTGGAGTCCTGTCCATTTGTCATTGATGTCTACTGTGAGGATGTCAAAGCAACTCTTCAGGCAGTTCATTTGGATTCTGGGGTGAAGATGTTGAATTCTGCTGTACAGAGATCCATCACGTCCAAAGCAGAGGCTAAAGCTCTGAAGGGCCATGAGAATGTGCTTGTTTACACATACAAAGGAGAGAGCAGGATTTCATCAGTCATTGCTAATAAGTCCAATCAGAAGGTGACGGTGCACATCAGCAATGAGCAAAGCAAAAACTTTGTGAGCAGCAGAGGCATGAGTGTGTTTGCAGTGGAGGTTCCTGCTAGAACTAAAATGGTTTGTCAGCACGTCATGGCTTTAAACGATCAACAGGAGTGGACTTACAACTGCACTGAGAGCATTATACCAAGTTTGTAAATGCTGCAGTTGTGACATTTATTATGAGGCAACAAAGAAAGTAGTAACATAATATTGTTTGCTTGTTATAACTATTGCAAACATTAATAATAgttttcagatttgtttattgTTCCTTTCAGCAAAATGCAATCatgattttcatttgtttttgtaaataaagcagtttatattttatttttatttgttttgcatttttattattttgttatgtgtttttaatgtaatattttttttggtttctgttaGCATTGTGCAAGTCGCTTCGAGAGATTGTGTGCACTCCTCTAATGAATTTGCGTAAGTTTCAAGTGAGTCAATtttaagaatagaatagaatgtagggtttaaatttaataaaaagtgaaaaGGTATGAGAGCGAGCTTTAAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04340 Hedgehog signaling pathway

ZFIN:

id description
ZDB-GENE-040625-115 Predicted to enable calcium ion binding activity. Orthologous to human EFCAB7 (EF-hand calcium binding domain 7).

Ensembl:

ensembl_id ENSDART00000139055

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065180 lncRNA downstream 279447 31745291 ~ 31749784 (-) True XLOC_032933
TCONS_00063976 lncRNA downstream 723273 31303320 ~ 31305958 (-) True XLOC_032929
TCONS_00063965 lncRNA downstream 881976 31069530 ~ 31147255 (-) True XLOC_032927
TCONS_00063964 lncRNA downstream 1160470 30855882 ~ 30868761 (-) True XLOC_032926
TCONS_00065179 lncRNA downstream 1570216 30452287 ~ 30459015 (-) True XLOC_032920
TCONS_00063995 lncRNA upstream 149825 32195808 ~ 32196825 (-) True XLOC_032940
TCONS_00064003 lncRNA upstream 369093 32415076 ~ 32416732 (-) False XLOC_032944
TCONS_00065181 lncRNA upstream 369093 32415076 ~ 32416753 (-) True XLOC_032944
TCONS_00064004 lncRNA upstream 528013 32573996 ~ 32592792 (-) True XLOC_032945
TCONS_00064748 lncRNA upstream 641019 32687002 ~ 32687386 (-) True XLOC_032946
TCONS_00063987 mRNA downstream 4006 32010183 ~ 32025225 (-) True XLOC_032936
TCONS_00063984 mRNA downstream 41291 31772182 ~ 31987940 (-) False XLOC_032934
TCONS_00063985 mRNA downstream 201634 31773747 ~ 31827597 (-) True XLOC_032934
TCONS_00063986 mRNA downstream 222886 31804665 ~ 31806345 (-) True XLOC_032935
TCONS_00063983 mRNA downstream 289522 31591808 ~ 31739709 (-) True XLOC_032932
TCONS_00063992 mRNA upstream 19111 32065094 ~ 32087108 (-) False XLOC_032938
TCONS_00063993 mRNA upstream 37548 32083531 ~ 32087111 (-) True XLOC_032938
TCONS_00063994 mRNA upstream 46049 32092032 ~ 32093830 (-) True XLOC_032939
TCONS_00063996 mRNA upstream 254035 32300018 ~ 32315494 (-) False XLOC_032941
TCONS_00063997 mRNA upstream 254609 32300592 ~ 32314913 (-) False XLOC_032941
TCONS_00063952 other downstream 1826194 30202921 ~ 30203037 (-) True XLOC_032918
TCONS_00063938 other downstream 2754823 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063931 other downstream 2944580 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063923 other downstream 2944677 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063998 other upstream 263705 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00064000 other upstream 348519 32394502 ~ 32405841 (-) False XLOC_032943
TCONS_00064015 other upstream 1397351 33443334 ~ 33443455 (-) True XLOC_032953
TCONS_00064019 other upstream 1632394 33678377 ~ 33681084 (-) True XLOC_032954
TCONS_00064020 other upstream 1680064 33726047 ~ 33726148 (-) True XLOC_032955

Expression Profile

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