RNA id: TCONS_00063996


Basic Information

Item Value
RNA id TCONS_00063996
length 4077
RNA type mRNA
GC content 0.38
exon number 12
gene id XLOC_032941
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 32300018 ~ 32315494 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaactataatattaACTTATATATGTGCATAACAGCAGAGCCATCAAATGTAAtaagattgtttttttcttttttttttcttttttttggtcaCCAAATTCTTGTACTCTCTTTTAATTCCCTAAAACCACTGCGTTGTCCACATTCTTTTTGGTGATGTTTAGTCTCCTCAGCTTCTCACTGTagcaactgattttttttttttacttaaaaatgaccAGTAACAGAAATACAGCAGAGGGTCATTAAATATGATAAGGCTATTTTATAATCAAATAATTCTGATACTCCTTATTTTTTACTCACACCGGCCCAGAAGCCACATGACCACATACCACAAGCTTCTTTTAGTATTGTTACAAACCCGTAATAAGCACCAACATGTGTCGACCAAAGGTTTTTTAACCAGGCCTTTGAAATATCTACATTCAAAAGTACGCGTCTGAAGCATAGGTCTGAAGGGAGAATGGGAAATACCGCGAGACCGAACGAGATCGCCACTTCCTCAAAATGTAAACAGAAATAGCTGCAGTGGGTTCTTCAGTATAACAAGACATAAACTTAGTCTGTTACGTGCTGTGATGGGTTTTGCTCCGTGGCTGAAAAAATGGAGACTAAAGGGACCGACGAGGTGGAGACACTGAAGTCCAAATTCATGTCAGCATGGCACAGTGTGAAATACAGCTGGGCTCTAAagtcaaaaactgcttttagccGTAATTCTCCTGTATTCTTGTTGGGAAAATGCTACCACTTCAAGGTTGTGGATGATGAAAACCCTACTGAGAGCACAGCTGAGGCATTAGATGACGATGTTGTCACAGGCAATGTTGATGAATTTCGAAAGGATTTCACCTCTCGAGTTTGGCTGACCTATCGAGAAGAGTTTCCTGCTCTTCCGGGCTCCAGCTTCACTTCAGACTGTGGCTGGGGTTGTACACTCCGAGCGGGGCAGATGATATTGGCACAGGCACTCTTGCTTCACATCTTGGGTAGAGACTGGAAGTGGTCAGAAGCATTGTCCCTGGAGCCCTTGGATACAGAGACGTGGACCAGCAGTGCCGCTCGGAGACTCGTGGCCACATTAGAGGCTTCCATTCAGGGGGAACGAGCACAAGCCTCTCAGCCTCTCTGTCCTGTTCAAGGAGAAGCTGAGGAGGCCGACTCTTACCTGAAAGAGACATATCATCGTACCATTGTATCCTGGTTTGGGGATGGACCCTCAGCACAGCTGGGCATCTACAAATTAGTGGAGCTAGGAATGACTTCCGGAAAACAGGCAGGAGATTGGTATGGCCCAGCAGTGGTAGCACACATACTGAGaaaaGCTGTTGATGAGGCAGTTGATGCAATGCTGAAAGGCATTCGTGTTTATGTAGCACAGGACTGCACAGTGTACAGTGCTGATGTTATTGATAGCCATTCAACGCGGACAGAAAGCCACAGTGATCCTCAGGGACTCGATTCTGGAGCTTCACCTGATAGTAGAGCTGTTGTTATCCTCATTCCTGTGAGACTGGGTGGAGAGAAGATCAACCCAGAATACTTAAACTTTGTCAAGAGCATTTTAAGCTTAGAGTACTGTATCGGCATCATTGGTGGAAAACCGAAACAGGCTTACTATTTTGTTGGATTTCAAGATGACAGCTTGATTTACATGGATCCTCATTACTGTCAGTCTTTTGTGGATGTCAGCACAAGCGATTTCCCTCTGCAGTCGTTTCATTGCCCATCACCAAAGAAAATGTCTTTCAGTAAAATGGACCCGAGCTGTACGATTGGATTCTACTCAAAAAGTGTTGAACACTTTGAAAAAATTGCCAATGAACTGTCAAAGATTCTGCAACCCTCGTCGAAAGAGAAGTACCCTGCATTCACCATAATGAAAGGCCATGGGAAGGATTATGAACTTTCGATTGCTGTAGAAAAGCGAGAATGGCCTTTCATCAGGGACGCAAGGAAAGCAGGCACAACATCAGGAGACTTTGTGCTGCTTTAATGCTTAAAACTGGTAACCAAAAAAaaaggacATTTTACAAAAATCTACAAGCAGTGCCTGCTCTAGAATCACAGATTTTAGACCATTTAACTGAACACTGATACTGATGCGAACACCTCTGGATCTTGCAAGCAAAGTTGAACACGGAAATTACCCTGCAAACATTTCAGCATGTTCATTTACTCTAATAGATACCGGGGgtcaatatgtttatttttttaacaaggaGTTCTTTATGTTGTTAGGTACATGTAGATAactattttttaaactaaaaatcaAATGTATAGTCTCATTTTTGAAACACATAAATGAAAtcacagaatttacattttattttggtatgtTTTATGTTACATTAACTGAAGGTATAACGTGCCTTTATAAGTGAGTAGAAAACACTGTATAGCATATAACTAAATCAGAAcctaattcatttttaaatgatatttagcAGTGGACATTAAAAAGCTGCTTCTACcatatttttatgaaaaatttTAAGAATTGAGCATTGATTTGTCCAGAAACTGTTTGATATTACATAAGTTAATTTacaattacatttagtcatttagcagatgcttttgttcaaagtgacttacaattgagagggcattcagcgattcaacaagaagaagcAATACAAAAAATAAGTGCTAATTATACACAGGTACTGTTaatgctcagagaattaagtgcttgGCTTAGAAAGGATGCGTGTGCTTTTTAATAGAAACAAAACTGTTTCTTCAGGTGGTTTATGAAACCCACTCACCTTCGAAAAAGCATTTTttagagatatggagtgattgtaagaaagtgcaAGACTGGTGCAAGTGTTGGTTAGTGAGAGATGGGTGTGTTTTCTgttggtggtttgtcaagcccactcacctgtgtaaagcACATTTAGTATTCTATAATGTTCAGAGGTTGCCGTGTCAATTAATGTCAGTTAACAACATTACTCGTATAATGCCGATATGTGAAACAATAGTTTCAAAACTGCAGAgatctttttagtttttttggagcttactttatttttttatggtgtAATGGAAATCATAAATTAGGATGAATGgagtaatttattattaaactatgCCTTATTTAATTAATAGGCATCTATTTAATAACATTGTCAATGTGACTGTATTGTACTGCAAATAATATCTTGCTTATTTGTATAGAAACACTTTTGAACCAAAGTACTGAGCATTGAACAGAACGCCAGTGAAGTGAATAACCACAATCATtttgtgtttgttaattaatttcaCCGTTTGCCAGTTTTAAGTGTTTGCAAATTACCGCGATGTATTTCAGTGTCATACTTCTGTTGCACAATGAATATTTCAGTTTAATAACTGTCGATTCAGAAATGTACAATAAAGCTAACATGACTAAAAACAACACTTTTAGTTTGTACTTGATCTTGCATCCTTTAATGACCAGCACAAATGTGTTATTGAGCTATTTTCGATCTATTAACTCATCTTTCCCAGCAAATGTACATGACATGCATTTCGCCAAATGGAACAAATCTGTATCTGGCGATTACGCCATTTTTCTGGGAGAAAGAAAATATCTTTGTGTTGGGCTCAATGTTGCCATGGTCAATTCCTGTTTCTGTTCCGTTTGAGCAATGCTTGTGCTATTTTCATGTTAAATACAAATTCTTATATTAATAAGGTCATAACCTTCAATTATGGGGTCCGGTTAGGGGAACAAGTTACCCTTCTGTGAGACCAAGCAGAATAAATCCTCGCCTGTCTCAGCACTGGATGTCGTGAAGACTGAAGCAGCGAAGCACAATACGCCTATCGTCTCAGTGTTTTCCAGTGTCTGTGATCAGTAAATTCATGCTGGGCTGAATTTAGGAAACGAGGCATTGAGGAAAGGAAGTTTGTGACATTAAGGGGTGAAGCAACATGCCAGCCTTTCTGTCAGTGTTACATGAAAGGGGGCTTGTGCTGGAAGGCATGAC

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0015031 protein transport biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-84 Predicted to enable cysteine-type endopeptidase activity. Predicted to act upstream of or within autophagy; protein transport; and proteolysis. Predicted to be located in cytoplasm. Orthologous to human ATG4C (autophagy related 4C cysteine peptidase).

Ensembl:

ensembl_id ENSDART00000127879

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063995 lncRNA downstream 103193 32195808 ~ 32196825 (-) True XLOC_032940
TCONS_00063991 lncRNA downstream 262019 32035287 ~ 32037999 (-) True XLOC_032937
TCONS_00063990 lncRNA downstream 265378 32029913 ~ 32034640 (-) False XLOC_032937
TCONS_00065180 lncRNA downstream 550234 31745291 ~ 31749784 (-) True XLOC_032933
TCONS_00063976 lncRNA downstream 994060 31303320 ~ 31305958 (-) True XLOC_032929
TCONS_00064003 lncRNA upstream 99582 32415076 ~ 32416732 (-) False XLOC_032944
TCONS_00065181 lncRNA upstream 99582 32415076 ~ 32416753 (-) True XLOC_032944
TCONS_00064004 lncRNA upstream 258502 32573996 ~ 32592792 (-) True XLOC_032945
TCONS_00064748 lncRNA upstream 371508 32687002 ~ 32687386 (-) True XLOC_032946
TCONS_00064008 lncRNA upstream 514022 32829516 ~ 32831650 (-) True XLOC_032948
TCONS_00063994 mRNA downstream 206188 32092032 ~ 32093830 (-) True XLOC_032939
TCONS_00063993 mRNA downstream 212907 32083531 ~ 32087111 (-) True XLOC_032938
TCONS_00063992 mRNA downstream 212910 32065094 ~ 32087108 (-) False XLOC_032938
TCONS_00063988 mRNA downstream 254035 32029231 ~ 32045983 (-) False XLOC_032937
TCONS_00063989 mRNA downstream 254067 32029234 ~ 32045951 (-) False XLOC_032937
TCONS_00063999 mRNA upstream 28703 32344197 ~ 32349153 (-) True XLOC_032942
TCONS_00064001 mRNA upstream 89177 32404671 ~ 32411727 (-) False XLOC_032943
TCONS_00064002 mRNA upstream 93618 32409112 ~ 32411703 (-) True XLOC_032943
TCONS_00064005 mRNA upstream 383865 32699359 ~ 32703317 (-) True XLOC_032947
TCONS_00064006 mRNA upstream 401944 32717438 ~ 32834385 (-) False XLOC_032948
TCONS_00063952 other downstream 2096981 30202921 ~ 30203037 (-) True XLOC_032918
TCONS_00063938 other downstream 3025610 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063931 other downstream 3215367 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063923 other downstream 3215464 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00064000 other upstream 79008 32394502 ~ 32405841 (-) False XLOC_032943
TCONS_00064015 other upstream 1127840 33443334 ~ 33443455 (-) True XLOC_032953
TCONS_00064019 other upstream 1362883 33678377 ~ 33681084 (-) True XLOC_032954
TCONS_00064020 other upstream 1410553 33726047 ~ 33726148 (-) True XLOC_032955
TCONS_00064023 other upstream 1595660 33911154 ~ 33916702 (-) False XLOC_032957

Expression Profile

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