RNA id: TCONS_00064000


Basic Information

Item Value
RNA id TCONS_00064000
length 718
RNA type processed_transcript
GC content 0.44
exon number 2
gene id XLOC_032943
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 32394502 ~ 32411727 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAACTCAGCAACAGCAAGCAAAACAATCCAGACAAGCCATCCAGCTTGTCCAGTCGTGCTCTCCTTCAGAACGCTGTAAAGAAAGAGCCAGAGGAAGACTGCGCTGATGCTGTGGCAGACGGGACACAGGTCAGTTTTGACCTCGCTCTCAGAAATCTTCTGGACTTTGAAGGAAAGTGGATGCTGTTTGATGACTCTGAAGTGAGACTCTATGAAGAAGAGGACTTCCTCCGTGCTTGTTCTCCAGAGACGTGCTCCACCTCTACACCATACCTGCTCTTCTACAAGAGAGTCTCTCAGTAAAACAGGCAATAGTAGCTGAGAAGAAAGTAAGGATCTCCACATCACAAAAATCGAACTGAAAAACACGAGAGTTTGAGCCAAGATGAAAGACAGTGCAGCAAGAAGCAGTTTTGAACACAGTATGACCTTTCTCTGAAAACTGTATTAGAAGAGGTGGACATGACAGGACAACCAAAGAAAACCTGACGTCCTTAAACAGCAAGTGAGCAACATCTGCACTCCAAACAAGAGTCAAGGAATGAAGCAAAACAGAACGTTTATGATGCAGGAAGTGCTGAAAACGTGTCGCTGTGGCCCAATTCAGAATGCCAGACTGAAACGGTTACGTTAATAGaaacagaatgatagacagaactAATATGTGCGGGAGTTACAAGGAAGGCAAATAAAgcacagtaagaaaaaaaaaacaaa

Function

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0006282 regulation of DNA repair biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko03460 Fanconi anemia pathway
ko01002 Peptidases and inhibitors
ko04121 Ubiquitin system
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-030131-726 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within regulation of DNA repair and ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human USP1 (ubiquitin specific peptidase 1).

Ensembl:

ensembl_id ENSDART00000133162

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063995 lncRNA downstream 197677 32195808 ~ 32196825 (-) True XLOC_032940
TCONS_00063991 lncRNA downstream 356503 32035287 ~ 32037999 (-) True XLOC_032937
TCONS_00063990 lncRNA downstream 359862 32029913 ~ 32034640 (-) False XLOC_032937
TCONS_00065180 lncRNA downstream 644718 31745291 ~ 31749784 (-) True XLOC_032933
TCONS_00063976 lncRNA downstream 1088544 31303320 ~ 31305958 (-) True XLOC_032929
TCONS_00064003 lncRNA upstream 9235 32415076 ~ 32416732 (-) False XLOC_032944
TCONS_00065181 lncRNA upstream 9235 32415076 ~ 32416753 (-) True XLOC_032944
TCONS_00064004 lncRNA upstream 168155 32573996 ~ 32592792 (-) True XLOC_032945
TCONS_00064748 lncRNA upstream 281161 32687002 ~ 32687386 (-) True XLOC_032946
TCONS_00064008 lncRNA upstream 423675 32829516 ~ 32831650 (-) True XLOC_032948
TCONS_00063999 mRNA downstream 45349 32344197 ~ 32349153 (-) True XLOC_032942
TCONS_00063996 mRNA downstream 79008 32300018 ~ 32315494 (-) False XLOC_032941
TCONS_00063997 mRNA downstream 79589 32300592 ~ 32314913 (-) False XLOC_032941
TCONS_00063994 mRNA downstream 300672 32092032 ~ 32093830 (-) True XLOC_032939
TCONS_00063993 mRNA downstream 307391 32083531 ~ 32087111 (-) True XLOC_032938
TCONS_00064002 mRNA upstream 3271 32409112 ~ 32411703 (-) True XLOC_032943
TCONS_00064005 mRNA upstream 293518 32699359 ~ 32703317 (-) True XLOC_032947
TCONS_00064006 mRNA upstream 311597 32717438 ~ 32834385 (-) False XLOC_032948
TCONS_00064007 mRNA upstream 311806 32717647 ~ 32726848 (-) False XLOC_032948
TCONS_00064009 mRNA upstream 560909 32966750 ~ 33023745 (-) False XLOC_032949
TCONS_00063998 other downstream 79628 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00063952 other downstream 2191465 30202921 ~ 30203037 (-) True XLOC_032918
TCONS_00063938 other downstream 3120094 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063931 other downstream 3309851 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063923 other downstream 3309948 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00064015 other upstream 1037493 33443334 ~ 33443455 (-) True XLOC_032953
TCONS_00064019 other upstream 1272536 33678377 ~ 33681084 (-) True XLOC_032954
TCONS_00064020 other upstream 1320206 33726047 ~ 33726148 (-) True XLOC_032955
TCONS_00064023 other upstream 1505313 33911154 ~ 33916702 (-) False XLOC_032957
TCONS_00064026 other upstream 1506348 33912189 ~ 33916660 (-) False XLOC_032957

Expression Profile

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