RNA id: TCONS_00064008


Basic Information

Item Value
RNA id TCONS_00064008
length 795
lncRNA type retained_intron
GC content 0.44
exon number 2
gene id XLOC_032948
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 32717438 ~ 32834385 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACATCTAGTTCAGCTTCAAGGACGACCCATAAGAGCACTGTGTATCGGTGGACTGCTAACAACAATGGCCAAAAGGGGGAAAAGGGATCTACCTTGTCTCCTAATATCCCTGCTACAGCCGCATTGTCAGTTGGCGCCTTTAAGCTGAGGAGTCGAACCAAGATCATCAGACGATCTCCTAGCAATCCCTGCTTAGAGAGAAGACACAGTCCCAATGTGCAGACTTTAAAGAGTCGGTATTCCTTGTGGAGGAGGACACACACTCAGGTGAAGAGTCCAACCAGTATTAAGCGAGCACAGCCCAAAGTGCTGGTTTCATTTGGCAGGCACAAGCTCCGTCGCCTCTCTCTCACCTCCACCTCATTAGGGACCTCAAGATCAGGTCAGTTACTATGACTGCACATTCACCAAATGCTTTGCAACTCTCAAATCACAATGCAGCTCCACCTCTGTCTTTTTAAACGCACAGATTGTTTTTACCCCCTCTGTGACTAATTGGCGTAATTAGTAATTAACACAAAACAACCTCTGGAAATTCATTATCGCTGCTTGGTTTGTATTCCTCAGAGAGGGGTTGAGATGGGCTTTATGTTCCCATAGAAACATAAAGATGCAGCAAAGATGAACAGTACAGTGGGTACTGTTGTGAAAGTTTTAATGTAGATGAGATCATAGAAATCTTTCTTTGAGTCTTCCTGTACTGTTGAAATCCGTAGAATACACAATGCCGTCATGTGTGCAAATATGTATGCTATGCAATATATGTAATCCTACAGTAGGTTATGCCTCACATC

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9399 Predicted to enable metal ion binding activity. Predicted to be active in nucleus. Orthologous to human ZC3H3 (zinc finger CCCH-type containing 3).

Ensembl:

ensembl_id ENSDART00000156461

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064748 lncRNA downstream 142130 32687002 ~ 32687386 (-) True XLOC_032946
TCONS_00064004 lncRNA downstream 236724 32573996 ~ 32592792 (-) True XLOC_032945
TCONS_00065181 lncRNA downstream 412763 32415076 ~ 32416753 (-) True XLOC_032944
TCONS_00064003 lncRNA downstream 412784 32415076 ~ 32416732 (-) False XLOC_032944
TCONS_00063995 lncRNA downstream 632691 32195808 ~ 32196825 (-) True XLOC_032940
TCONS_00064010 lncRNA upstream 135746 32967396 ~ 32969614 (-) False XLOC_032949
TCONS_00065182 lncRNA upstream 287191 33118841 ~ 33129263 (-) True XLOC_032951
TCONS_00065183 lncRNA upstream 358932 33190582 ~ 33210388 (-) True XLOC_032952
TCONS_00064028 lncRNA upstream 1081226 33912876 ~ 33915570 (-) False XLOC_032957
TCONS_00064029 lncRNA upstream 1081226 33912876 ~ 33916720 (-) False XLOC_032957
TCONS_00064007 mRNA downstream 102668 32717647 ~ 32726848 (-) False XLOC_032948
TCONS_00064005 mRNA downstream 126199 32699359 ~ 32703317 (-) True XLOC_032947
TCONS_00064001 mRNA downstream 417789 32404671 ~ 32411727 (-) False XLOC_032943
TCONS_00064002 mRNA downstream 417813 32409112 ~ 32411703 (-) True XLOC_032943
TCONS_00063999 mRNA downstream 480363 32344197 ~ 32349153 (-) True XLOC_032942
TCONS_00064009 mRNA upstream 135100 32966750 ~ 33023745 (-) False XLOC_032949
TCONS_00064011 mRNA upstream 135920 32967570 ~ 32999646 (-) True XLOC_032949
TCONS_00064012 mRNA upstream 239116 33070766 ~ 33075576 (-) True XLOC_032950
TCONS_00064013 mRNA upstream 272894 33104544 ~ 33129312 (-) False XLOC_032951
TCONS_00064014 mRNA upstream 273980 33105630 ~ 33129045 (-) False XLOC_032951
TCONS_00064000 other downstream 423675 32394502 ~ 32405841 (-) False XLOC_032943
TCONS_00063998 other downstream 514642 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00063952 other downstream 2626479 30202921 ~ 30203037 (-) True XLOC_032918
TCONS_00063938 other downstream 3555108 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063931 other downstream 3744865 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00064015 other upstream 611684 33443334 ~ 33443455 (-) True XLOC_032953
TCONS_00064019 other upstream 846727 33678377 ~ 33681084 (-) True XLOC_032954
TCONS_00064020 other upstream 894397 33726047 ~ 33726148 (-) True XLOC_032955
TCONS_00064023 other upstream 1079504 33911154 ~ 33916702 (-) False XLOC_032957
TCONS_00064026 other upstream 1080539 33912189 ~ 33916660 (-) False XLOC_032957

Expression Profile

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