RNA id: TCONS_00064010


Basic Information

Item Value
RNA id TCONS_00064010
length 535
lncRNA type retained_intron
GC content 0.45
exon number 2
gene id XLOC_032949
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 32966750 ~ 33023745 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAGCTGAaagcttatatatttttttggcttttgtttttctatGCAGATATTATTCAGCTATTAAACAATATTACAATAGATGCTGCTTTTTTTACCGTTTTGAAAACCATTTTCATTTATCTTTTCAGGGTTTTGTTGTAGCTGTCCTTTACTGCTTCCTTAATGGAGAGGTGCAGTCCGAAATCAAGCGAAAGTGGCGCAGCTGGACGGTGAACCGCTACTTTGCGGTGGACATGAAGCACAGACACCCTTCTCTGGCCAGCAGTGGAGTCAACGGGGGAACACAGCTCTCCATCCTCAGCAAAAGCAGCTCGCAAATCCGCATGTCCAGCCTTCAAGCCGAAACACCGGCTACGTGAGCGCTCAGACCCACAAACTGAAGGCCAAACACCTCAGAGCGACATCCCATAATCTACAGTGCGTCAACAACATACAAATCCTGTTTCATCTTCGTTTGAGGTCCGTATCGTGTCGGTTAAAGTTGTAATATCTGGCAACCGTCAGCTGTATTATCTGGCAATCGCCAATAGATG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0007200 phospholipase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0043005 neuron projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017046 peptide hormone binding molecular_function
GO:0008528 G protein-coupled peptide receptor activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004999 vasoactive intestinal polypeptide receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050315-1 Predicted to enable G protein-coupled peptide receptor activity and peptide hormone binding activity. Acts upstream of or within adenylate cyclase-modulating G protein-coupled receptor signaling pathway and phospholipase C-activating G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and plasma membrane. Is expressed in several structures, including central nervous system; eye; gut; heart; and pleuroperitoneal region. Orthologous to human ADCYAP1R1 (ADCYAP receptor type I).

Ensembl:

ensembl_id ENSDART00000154592

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064008 lncRNA downstream 135746 32829516 ~ 32831650 (-) True XLOC_032948
TCONS_00064748 lncRNA downstream 280010 32687002 ~ 32687386 (-) True XLOC_032946
TCONS_00064004 lncRNA downstream 374604 32573996 ~ 32592792 (-) True XLOC_032945
TCONS_00065181 lncRNA downstream 550643 32415076 ~ 32416753 (-) True XLOC_032944
TCONS_00064003 lncRNA downstream 550664 32415076 ~ 32416732 (-) False XLOC_032944
TCONS_00065182 lncRNA upstream 149227 33118841 ~ 33129263 (-) True XLOC_032951
TCONS_00065183 lncRNA upstream 220968 33190582 ~ 33210388 (-) True XLOC_032952
TCONS_00064028 lncRNA upstream 943262 33912876 ~ 33915570 (-) False XLOC_032957
TCONS_00064029 lncRNA upstream 943262 33912876 ~ 33916720 (-) False XLOC_032957
TCONS_00065184 lncRNA upstream 943262 33912876 ~ 33916722 (-) False XLOC_032957
TCONS_00064006 mRNA downstream 133011 32717438 ~ 32834385 (-) False XLOC_032948
TCONS_00064007 mRNA downstream 240548 32717647 ~ 32726848 (-) False XLOC_032948
TCONS_00064005 mRNA downstream 264079 32699359 ~ 32703317 (-) True XLOC_032947
TCONS_00064001 mRNA downstream 555669 32404671 ~ 32411727 (-) False XLOC_032943
TCONS_00064002 mRNA downstream 555693 32409112 ~ 32411703 (-) True XLOC_032943
TCONS_00064012 mRNA upstream 101152 33070766 ~ 33075576 (-) True XLOC_032950
TCONS_00064013 mRNA upstream 134930 33104544 ~ 33129312 (-) False XLOC_032951
TCONS_00064014 mRNA upstream 136016 33105630 ~ 33129045 (-) False XLOC_032951
TCONS_00064016 mRNA upstream 694052 33663666 ~ 33871055 (-) False XLOC_032954
TCONS_00064017 mRNA upstream 698959 33668573 ~ 33685325 (-) False XLOC_032954
TCONS_00064000 other downstream 561555 32394502 ~ 32405841 (-) False XLOC_032943
TCONS_00063998 other downstream 652522 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00063952 other downstream 2764359 30202921 ~ 30203037 (-) True XLOC_032918
TCONS_00063938 other downstream 3692988 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063931 other downstream 3882745 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00064015 other upstream 473720 33443334 ~ 33443455 (-) True XLOC_032953
TCONS_00064019 other upstream 708763 33678377 ~ 33681084 (-) True XLOC_032954
TCONS_00064020 other upstream 756433 33726047 ~ 33726148 (-) True XLOC_032955
TCONS_00064023 other upstream 941540 33911154 ~ 33916702 (-) False XLOC_032957
TCONS_00064026 other upstream 942575 33912189 ~ 33916660 (-) False XLOC_032957

Expression Profile

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