RNA id: TCONS_00064017


Basic Information

Item Value
RNA id TCONS_00064017
length 2310
RNA type mRNA
GC content 0.50
exon number 16
gene id XLOC_032954
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 33663666 ~ 33871055 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgtctttcttttctctgTTTTTCAGCCCTGGACGGTCACCAATATCATTTGACCATGAGATTGTCATGATGAACCATGTCTACAAGGAGCGTTTTCCTAAGGCTCATGAGCGTTCAGAAAGTGGGGAGGTGACATTTGTCACCCAGCTAGTTAAAAAGCTGATGATAATCATCGCTCGGCCTGCCCGGCTGCTAGAATGTTTGGAGTTTGACCCGGAGGAGTTCTACCACCTGTTAGAGGCAGCTGAAGGTCATGCTAAAGAAGGTCAAGGCATCAAGTCTGACATCCCTCGATACATCATCAGCCAGCTGGGCCTCACCAGGGACCCCCTTGAGGAAATGGCCCAGCTGAGCAGCTATGACAGCGGTAACCCTGAAACACCAGAGACAGAGACAGATTCCACAGATCCACTCCAACCTCAGCCTCAACCGCAGCCCAAGACTAAAACACCTCGCGAGGAAGACTTCGAGACCATTAAACTCATCAGTAATGGAGCCTATGGGGCTGTGTTTCTGGTGAGGCATAAAGAGACCCGTCAGCGATTTGCCATGAAGAAGATCAACAAGCAGAACCTGATCCTAAGAAACCAGATCCAGCAGGCCTTTGTGGAAAGAGACATCTTGACATTTGCAGAAAACCCTTTTGTTGTCAGCATGTTCTGCTCCTTTGAGACAAGGAGACATCTTTGCATGGTTATGGAGTATGTGGAGGGTGGGGATTGTGCCACTCTCCTGAAGCACATTGGAGCTCTGCCTGTGGATATGGCACGCATGTACTTTGCTGAAACCGTTCTTGCATTGGAATACCTTCACAACTATGGTATTGTGCACAGAGACCTCAAACCTGACAATCTCCTGATTACCTCAATGGGACACGTCAAACTGACTGACTTTGGCCTGTCCAAGATTGGTTTAATGAGCTTAACAACTAATCTGTATGAGGGCCACATTGAAAAAGATACTCGAGAATTCTTGGACAAACAGgTGTGTGGTACTCCTGAATACATTGCTCCTGAGGTTATTCTGCGACAGGGTTATGGAAAACCAGTTGACTGGTGGGCCATGGGAGTCATCTTGTATGAGTTTCTGGTGGGCTGTGCTCCTTTCTTTGGAGATACACCTGAAGAACTGTTTGGACAAGTCATCAGTGATGAGATAATCTGGCCAGAAGGTGATGAAGCTTTGCCTCCGGATGCTCAAGATCTCATCTCCAAACTTCTTCGGCAAAACCCTCTAGAGCGTCTTGGGACAGGGAGTGCGTTTGAGGTAAAACAGCACCGCTTCTTTACTGATCTGGACTGGAACAGCCTCCTGAGGCAGAAGGCTGAGTTCATTCCTCAGCTGGAGTCGGAGGATGACACTAGCTACTTTGACACACGCTCAGATCGTTATCATCATGTGGACTCAGAGGAAGAAGATGACACAAATGATGACGACCATTTGGAGATCCGTCAGTTCTCCTCCTGTTCGCCACGATTCAGCAAGGTGTATAGTAGTATGGAGCGTCTTTCCTTGCATGAGGAGAAACGCACCCCTCCTCCTACTAAGCGCAGTCTGAGTGAAGAGGGAGGAGAGCGGATCGACAGTCTAAGTGGCCTAAAGTCCAGAGACCGAAGCTGGTTGGTGGGCTCACCTGAAATTCTCAGAAAGCGTCTCTCTGTTTCCGAGTCTTCTCACACCGAGAGTGACTCGAGTCCACCTCTGACTGTTCGTCGCCGCTGCTGCTCGGCCATCATTGAAATGCCTCGCTTCGCCATATCCAGTGAAGAGGATAGCTGTGTGGGGAGCAGGAAGACCCCTGTGAGAGGCCCTCGAGGGGATGATCTGCCTCAGGCCATACCAGAGCTCCCTGTAGAGAGAGAGCTCAGGCTGGATGAATCGCCCACCACGCCAGGATCCACTTCCATTTCTGAAAACTCCACTCCAAGAGCCATCAGTGATTTGGCGGCTCGAAGAGCTCGCCACAGACTGCTTTCAGGAGATACAGATAAACACACATCACGTCCACTTAGCAAAGTCATCAAATCAGCTTCAGCAACAACCCTGTCACTCATGATCCCTGCTGATCACCATGGTGCTTCTCCACTGGCCAGTCCCATGTCGCCTCACTCTCTCTCTTCGAACCCCTCATCACGTGACTCCTCGCCCAGCCGTGACCTTTCCCCAGCTGTCTGTAGTGTTAAACCTGCCATAATCATCCATCGAGCTGGAAAGAAATATGGTTTTACTTTACGTGCAATCCGGGTTTACATGGGAGACACAGACATATATACTGTCCATCACATGGTCTGGGTGAGTAGTACTGGGTGA

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0015630 microtubule cytoskeleton cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-150 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in cytoskeleton organization; intracellular signal transduction; and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation and regulation of interleukin-12 production. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in microtubule cytoskeleton. Orthologous to human MAST2 (microtubule associated serine/threonine kinase 2).

Ensembl:

ensembl_id ENSDART00000181883

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065183 lncRNA downstream 458185 33190582 ~ 33210388 (-) True XLOC_032952
TCONS_00065182 lncRNA downstream 539310 33118841 ~ 33129263 (-) True XLOC_032951
TCONS_00064010 lncRNA downstream 698959 32967396 ~ 32969614 (-) False XLOC_032949
TCONS_00064008 lncRNA downstream 836923 32829516 ~ 32831650 (-) True XLOC_032948
TCONS_00064748 lncRNA downstream 981187 32687002 ~ 32687386 (-) True XLOC_032946
TCONS_00064028 lncRNA upstream 227551 33912876 ~ 33915570 (-) False XLOC_032957
TCONS_00064029 lncRNA upstream 227551 33912876 ~ 33916720 (-) False XLOC_032957
TCONS_00065184 lncRNA upstream 227551 33912876 ~ 33916722 (-) False XLOC_032957
TCONS_00064034 lncRNA upstream 233488 33918813 ~ 33921694 (-) False XLOC_032958
TCONS_00065185 lncRNA upstream 298545 33983870 ~ 33984665 (-) True XLOC_032960
TCONS_00064013 mRNA downstream 539261 33104544 ~ 33129312 (-) False XLOC_032951
TCONS_00064014 mRNA downstream 539528 33105630 ~ 33129045 (-) False XLOC_032951
TCONS_00064012 mRNA downstream 592997 33070766 ~ 33075576 (-) True XLOC_032950
TCONS_00064009 mRNA downstream 644828 32966750 ~ 33023745 (-) False XLOC_032949
TCONS_00064011 mRNA downstream 668927 32967570 ~ 32999646 (-) True XLOC_032949
TCONS_00064021 mRNA upstream 189812 33875137 ~ 33878665 (-) False XLOC_032956
TCONS_00064022 mRNA upstream 189967 33875292 ~ 33875919 (-) True XLOC_032956
TCONS_00064024 mRNA upstream 225829 33911154 ~ 33916788 (-) False XLOC_032957
TCONS_00064025 mRNA upstream 225830 33911155 ~ 33913184 (-) False XLOC_032957
TCONS_00064027 mRNA upstream 227016 33912341 ~ 33916756 (-) False XLOC_032957
TCONS_00064015 other downstream 225118 33443334 ~ 33443455 (-) True XLOC_032953
TCONS_00064000 other downstream 1262732 32394502 ~ 32405841 (-) False XLOC_032943
TCONS_00063998 other downstream 1353699 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00063952 other downstream 3465536 30202921 ~ 30203037 (-) True XLOC_032918
TCONS_00063938 other downstream 4394165 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00064020 other upstream 40722 33726047 ~ 33726148 (-) True XLOC_032955
TCONS_00064023 other upstream 225829 33911154 ~ 33916702 (-) False XLOC_032957
TCONS_00064026 other upstream 226864 33912189 ~ 33916660 (-) False XLOC_032957
TCONS_00064030 other upstream 227862 33913187 ~ 33916714 (-) False XLOC_032957
TCONS_00064031 other upstream 228041 33913366 ~ 33916722 (-) False XLOC_032957

Expression Profile

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