RNA id: TCONS_00064027


Basic Information

Item Value
RNA id TCONS_00064027
length 1143
RNA type mRNA
GC content 0.48
exon number 11
gene id XLOC_032957
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 33911154 ~ 33916788 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCCGTATTTAAAGGCGCCAACAAAGACTAATTCAGGAGCAGCTTCACAAACCCGCCACAGACACACGCATCATCCAACAGTACAGTTCAGCTTAGTTTATTTAACGCATTAAAATGCCCGAAGAAACAGGAGCTACTTCAACCGCGGAAAGGATGGAAGAGAAACCTTGCTCCTCAAGCACTGGAGACAGTTCTGTCGATGTCGCTGAGGAAGCAAAGAAGCTGATTGGCACTGGAAGTCGGCACTTAGTGATGGGTGATGTTGTGTCTGCAGTCAGTGTGTTCCAGGAGGCTTGTGCCATGCTagCTGAGAAGTATGGAGACACTGCTGATGAATGTGGGGAAGCTTTTTTCTTTTGTGGGAAGGCCCTTCTGGAGCTTGCCAGGATGGAGAACACTGTGCTCGGTAATGCTTTAGAAGGAGTCCCAGAAGAATCCTCTGAGGAGGGTGAGAAGCAGGATGACTCGAAGATCGAAAGTGCTGACAACTTGgatggtgatgACGATGGTGATGAGGATGAGGACGATGATGAGGATGCAGAGGGTGATGCTAAGGATAAGgAGAGTGAGGAGGATGAAGTTGGAAACCTGCAGTTGGCCTGGGAGATGCTTGAAGTTGCTAAAGTTATTTATAAAAGAAAAGATGACAAAGAAGATCAGTTAATGGCAGCACAGATTCACCTGAAACTTGCAGAAGTTGGAGTTGAATCAGGAAACTACAGTCAGGCTCTGGAGGACTTCAATGAGTGTTTAACCCTGCAGCTCAAGCACCTTCCCTCTCATAGTCGTCTTTTGGCTGAGACTCATTATCAGTTGGGCACCACTTACAGTTACACCACACAATACAACCAAGCCATAGAGCACTTCTCCAACTCTATCAAAGTCATCGAGAGCCGTCTTGCTATGCTTCAGGAGGTGATCGACAAGGCAGAAGGTGAAGACTCAGCAAAGGAAGAGAAGGGCGAGTTTGAGGAGTTGAAACAGTTGCTGCCAGAAATTAAAGAGAAGATTGAAGATGCCAAGGAGAGCCAGAGGACAGCTGCAGCAGCTTCAGAGGCCATCCATCAGACTCTAGCTGGAGCATCCACATCATCTGCATTCCCCACTGAAAATGGTGGCCCGTCTTCATCCACTGCTAGTCAG

Function

GO:

id name namespace
GO:0006335 DNA replication-dependent nucleosome assembly biological_process
GO:0034080 CENP-A containing nucleosome assembly biological_process
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0042393 histone binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-5511 Predicted to enable histone binding activity. Predicted to be involved in CENP-A containing nucleosome assembly and DNA replication-dependent nucleosome assembly. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Is expressed in several structures, including eye; immature eye; pectoral fin; pharyngeal arch; and ventricular zone. Orthologous to human NASP (nuclear autoantigenic sperm protein).

Ensembl:

ensembl_id ENSDART00000137447

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065183 lncRNA downstream 701953 33190582 ~ 33210388 (-) True XLOC_032952
TCONS_00065182 lncRNA downstream 783078 33118841 ~ 33129263 (-) True XLOC_032951
TCONS_00064010 lncRNA downstream 942727 32967396 ~ 32969614 (-) False XLOC_032949
TCONS_00064008 lncRNA downstream 1080691 32829516 ~ 32831650 (-) True XLOC_032948
TCONS_00064748 lncRNA downstream 1224955 32687002 ~ 32687386 (-) True XLOC_032946
TCONS_00064034 lncRNA upstream 2057 33918813 ~ 33921694 (-) False XLOC_032958
TCONS_00065185 lncRNA upstream 67114 33983870 ~ 33984665 (-) True XLOC_032960
TCONS_00065186 lncRNA upstream 241861 34158617 ~ 34177898 (-) True XLOC_032962
TCONS_00065187 lncRNA upstream 733039 34649795 ~ 34652139 (-) True XLOC_032965
TCONS_00064749 lncRNA upstream 900427 34817183 ~ 34818189 (-) True XLOC_032966
TCONS_00064021 mRNA downstream 33676 33875137 ~ 33878665 (-) False XLOC_032956
TCONS_00064022 mRNA downstream 36422 33875292 ~ 33875919 (-) True XLOC_032956
TCONS_00064016 mRNA downstream 41286 33663666 ~ 33871055 (-) False XLOC_032954
TCONS_00064018 mRNA downstream 205063 33674089 ~ 33707278 (-) False XLOC_032954
TCONS_00064017 mRNA downstream 227016 33668573 ~ 33685325 (-) False XLOC_032954
TCONS_00064035 mRNA upstream 2057 33918813 ~ 33925409 (-) False XLOC_032958
TCONS_00064036 mRNA upstream 4324 33921080 ~ 33925381 (-) False XLOC_032958
TCONS_00064037 mRNA upstream 4339 33921095 ~ 33925432 (-) False XLOC_032958
TCONS_00064038 mRNA upstream 4545 33921301 ~ 33924883 (-) False XLOC_032958
TCONS_00064039 mRNA upstream 4545 33921301 ~ 33924912 (-) False XLOC_032958
TCONS_00064020 other downstream 186193 33726047 ~ 33726148 (-) True XLOC_032955
TCONS_00064019 other downstream 231257 33678377 ~ 33681084 (-) True XLOC_032954
TCONS_00064015 other downstream 468886 33443334 ~ 33443455 (-) True XLOC_032953
TCONS_00064000 other downstream 1506500 32394502 ~ 32405841 (-) False XLOC_032943
TCONS_00063998 other downstream 1597467 32309688 ~ 32314874 (-) True XLOC_032941
TCONS_00064052 other upstream 727497 34644253 ~ 34644370 (-) True XLOC_032964
TCONS_00064056 other upstream 909899 34826655 ~ 34832346 (-) False XLOC_032967
TCONS_00064055 other upstream 909899 34826655 ~ 34832346 (-) False XLOC_032967
TCONS_00064057 other upstream 916392 34833148 ~ 34838299 (-) True XLOC_032967
TCONS_00064061 other upstream 1015194 34931950 ~ 34938693 (-) False XLOC_032969

Expression Profile

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