RNA id: TCONS_00064043


Basic Information

Item Value
RNA id TCONS_00064043
length 1840
RNA type mRNA
GC content 0.43
exon number 12
gene id XLOC_032960
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 33949280 ~ 34008901 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGGTGAATTCAGAACCTCGCCAACCAAAGCCAGAGTTATTGGCTATGGATGAGGACCCAAAATGTTTCACCAGGAATCTAGAAGACTTCACTTGCTTTTGGGATGCACCTGTTGAAAAGTCCTATGATTTTCTTTATATAATTGAAGGATTAATGGAAGAGAAAAGATGTGATGTGAAACAACAAACTTTTAAAGAGAAGATCCTCAACATTTGTACATTCCCACCAAGTGACGTCTACCTATATGTGGAGACACACATCAGAGTGATAGACAAAGACACCAACACCACCATCTACAGTCGAGCTGTCAGTGTGGAAGACCAGCTTCTGCTATATCCACCGTCAAACATATCCCTTCATCCAACTGAAGAGGTGGGCCAAATGTTAGTGAAATGGAAAAGATCAAGCAATGAGCATGAAATTCGTTACAGCTTCAAAAACACAAGCACAGTTAAATCTGTGTCAGAAAATGACTATAAGCTTGTCTCACTGGTCCCAGGAGAGAACTGCACTGTGCAAATGAGAGTCAAACCTAGTGGTGACTTCAAAAGATTTTGGAGTGATTGGTCGAACCCTGTAACAGCTATGGTGCCACAAACAGCAGGTGACATAGAGTTCAGGTGCCACACTTCTGATCTGATTCAAATCATTTGCAAATGGAGGGGAGACTTATATAAGGACAATACATACAGCTTCTACTATAAACAATTAAACAGAAGTTCATGGAGCAGTTGGAAGTTGTGTCCCAATTGCAATAACTCCATCCATCAGTGTGTCCTGTATGGCCAGAAGTCCAATGTCTTTAAGTTTTACCTCAATACAGGGTTGCAACCATTCAGCCGAACATTTTATGCAGAGACTTTCTATATGAACATTCAGACAAGGCCTCCAGAAGGTCTGAAGGTACAGATTGGGGAAGAAAGGCTTTGTTTGACATGGGATTCACCATTTCTGATCATTTCTAAGCATCTAATGTACCAGATCCGTTATCAGCATCATGAAGAGAATCAGTGGAAGGGTTTTAAAGCTtctggatccaagaccagcactTGTCTAGATGTGCACAGAGGGGGTCGATACACCATCCAGGTTCGAGCACAACCCAATGGATCTGTGTACAGCGGAAACTGGAGTGACTGGTCAAAACCTGTTACAACCAACCTACCTTTAAGCAAAGAGTggattatttttgtttgcatacCAGTGGCTCTGATCATCATTGCAACTGCAGTCATCTCTTTCTTCTCCAGATACTTCCGAAAGGTCAAGAGGTCCCTGTGGCCACCAGTACCAAACCTTAACAAGGTCCTGGAAAACATCCTGACTGATATCAGTGGATCACACTGGGTAATTGATAACTTTTATAATGATTTAGTGTATGTTCAGAAGACAGTGGAGCCAACCTTCAACATTAAGCAATGTGATGATGACACTGCTACATCAGTGGTGGAGGTTCTCACTGAGGGGGAATCTGCGGTCAAAACCTGTAAGAACACCTGTCCTCTGCTCTCTGAGCACAGTGAAAAACATGGAGAACATTTCAGAGAGGACTTGGAAATGGCGCAAGATTATGTGATTTTGAACAACAATATAATCCCCTGCCTTACGGGAAACGACTACGTGTATAAGGATGTTGCTTCAACACATCTGGCCAATGAAAAACAACACTCTTGCTCCAGCACTTCTTACACCTCCCTACCAGATCACACCACAGATATTCTCAACCAATCCTATCTCCTTTTGGCAGAACAATCCGATCTTGGGGCGTATCAAACAACCTGTGGCCAGTACACCAATCTGGAGATCACAGCAGTATCATGTGTAGCAATTGGAGAGTGA

Function

GO:

id name namespace
GO:0002574 thrombocyte differentiation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko04630 JAK-STAT signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko01002 Peptidases and inhibitors
ko04050 Cytokine receptors
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-060421-1 Acts upstream of or within thrombocyte differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blood; nucleate erythrocyte; thrombocyte; and ventral wall of dorsal aorta. Used to study congenital amegakaryocytic thrombocytopenia. Human ortholog(s) of this gene implicated in congenital amegakaryocytic thrombocytopenia; essential thrombocythemia; myelofibrosis; thrombocytopenia; and thrombocytosis. Orthologous to human MPL (MPL proto-oncogene, thrombopoietin receptor).

Ensembl:

ensembl_id ENSDART00000151725

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064034 lncRNA downstream 27825 33918813 ~ 33921694 (-) False XLOC_032958
TCONS_00065184 lncRNA downstream 32797 33912876 ~ 33916722 (-) False XLOC_032957
TCONS_00064029 lncRNA downstream 32799 33912876 ~ 33916720 (-) False XLOC_032957
TCONS_00064028 lncRNA downstream 33949 33912876 ~ 33915570 (-) False XLOC_032957
TCONS_00065183 lncRNA downstream 739131 33190582 ~ 33210388 (-) True XLOC_032952
TCONS_00065185 lncRNA upstream 5248 33983870 ~ 33984665 (-) True XLOC_032960
TCONS_00065186 lncRNA upstream 179995 34158617 ~ 34177898 (-) True XLOC_032962
TCONS_00065187 lncRNA upstream 671173 34649795 ~ 34652139 (-) True XLOC_032965
TCONS_00064749 lncRNA upstream 838561 34817183 ~ 34818189 (-) True XLOC_032966
TCONS_00065188 lncRNA upstream 873272 34851894 ~ 34860590 (-) True XLOC_032968
TCONS_00064041 mRNA downstream 17823 33926829 ~ 33931696 (-) True XLOC_032959
TCONS_00064037 mRNA downstream 24087 33921095 ~ 33925432 (-) False XLOC_032958
TCONS_00064046 mRNA upstream 901 33979523 ~ 34006917 (-) False XLOC_032960
TCONS_00064045 mRNA upstream 901 33979523 ~ 34006917 (-) False XLOC_032960
TCONS_00064047 mRNA upstream 901 33979523 ~ 34008901 (-) False XLOC_032960
TCONS_00064048 mRNA upstream 2874 33981496 ~ 34008827 (-) False XLOC_032960
TCONS_00064049 mRNA upstream 5052 33983674 ~ 34008879 (-) False XLOC_032960
TCONS_00064031 other downstream 32797 33913366 ~ 33916722 (-) False XLOC_032957
TCONS_00064030 other downstream 32805 33913187 ~ 33916714 (-) False XLOC_032957
TCONS_00064032 other downstream 32806 33913795 ~ 33916713 (-) False XLOC_032957
TCONS_00064023 other downstream 32817 33911154 ~ 33916702 (-) False XLOC_032957
TCONS_00064026 other downstream 32859 33912189 ~ 33916660 (-) False XLOC_032957
TCONS_00064052 other upstream 665631 34644253 ~ 34644370 (-) True XLOC_032964
TCONS_00064056 other upstream 848033 34826655 ~ 34832346 (-) False XLOC_032967
TCONS_00064055 other upstream 848033 34826655 ~ 34832346 (-) False XLOC_032967
TCONS_00064057 other upstream 854526 34833148 ~ 34838299 (-) True XLOC_032967
TCONS_00064061 other upstream 953328 34931950 ~ 34938693 (-) False XLOC_032969

Expression Profile

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