RNA id: TCONS_00064048


Basic Information

Item Value
RNA id TCONS_00064048
length 6189
RNA type mRNA
GC content 0.43
exon number 22
gene id XLOC_032960
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 33949280 ~ 34008901 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGAGGGTAGTTTTCAGCGTGTCAGCAGCACAGATTTCCACGCGCAGACTGAATCAGTGCGCCGACAATCATAGCGATAGTAGAAATGTGCAATAAGGAGCATCGGCGGCTCGAGACCTGGAAGATCCCACTGGAATGACAGATCCTGTATTTGGATAAAATCTAACGGATTACTCGAGAGACAAAACAAGATTACAGATATGCTGCGTTTAATCTGCATTTTATTCCTCGTTAACCTCTCTGATGCTGTCATGGATCTCACCATGACCTCTAATGGGGCCACATCTGCTAATCATTTCCACCTCTcctgcatttctggagagcgtgacaCTGATGGCATTCAGCTGAGCATCAAAAAAGACAACAGCATTGTTCTTCGTGCAGATACCCCTAGTTTCAATCTTCAGAGGCCACAGACAAAAGAAGTGGTGGCTACTGGATTTACAGGTTTTGACCACAGTGGGATTTTCTACTGTCACTCAAAAAGAGGATCAGACCAGCTTGGCAATGTTACACTAATTAACAACTACAGCAAAGGTCATTTTAAACCAGTGAGGGTCACTATGACGGTCAGTAAAGGagaaaatgtgcatttaattATGGACGTCCTTGGGACAGAAAGAAGAGACATCGCTTGGAAATTCAATGGCAACTACTATTATATGACTCCTATTGCTGATGTTGAAAACCGCACAGCAGTTTTGGATCTGAAGAAAGTTGATGAAAGCTATGCAGGGATTTACAGTGCCAGCTATGTTGGAGACAGTGCTCTATATAGCGCTTGGATGCGCCTCATCGTTCGTGATTGTCCAAAGAACAAATGGGGCTCAGACTGTGACAAGGAGTGTCCCGAATGCCTAAATGGAGGTGTGTGCCATGACAAAAATGGAGATTGTGTTTGTCCTCCAGGGTTTATGGGAATGCGCTGTGAGACAGCCTGTCGGGAAGGAATGTTTGGTCGGAACTGCCAGGAATCCTGTAAGCCGGAGAATGGATGCCAGGGCTTGAGTTTTTGCCTTACAGATCCTTATGGGTGTTCTTGTGCCAGTGGCTGGCATGGAGATCGCTGTCGTAAACCCTGTCTTGAAGGAATGTACGGTGCTGACTGTCTCCTAAGTTGCAACTGCAAGAACAAAGGCAAATGCAATCGATTTAGTGGCTGCCAATGTTCTACAGGCTGGAGAGGGCAATACTGTGAGAAATCAGATCGCGCACCAGAGATTTTAGACATAGCCAGTAACCTGGAGGGAAACTTGAACTCAAGCCACAAGATCACATGTTCTGCAACAGGCCATCCACTGCCTAGCCATTTGAGCATCGAGCTACGCAAGCTGGAAAGCACCGTTCTGAAGGCATTCCACACTATTTTGGACTCCAAAAAAAGCACAGCTCACTTTGAGATCCCACGTCTGTCTCCAGAGCACAATGGTTTGTGGGAATGTCGAGTCTCGACCAATGGTGGGCAGGATTCTTTGAAGTTTACCTTAACTGTGAAAGAGCCACCCTATCCAACCGCTGCTCCCAAACTGCTGTTGAGAAGTAGCAGACAACTGGTTGTAAAGGCAGTGGACAGTTATGCTGGAGATGGTCCCATTGTTTCCACTAAGCTGCTTTACAAGCAAGTGAATACAGAAGACTCATGGTCCCCCATCATAGtgcaTGGCAGTGATCAAATCACATTACAAAACCTGAAGCCCTCAACCAAATACCATGTACGTGTACAACTTGCTCGTCCAGGAGAAGGAGGAGAGGGTCCTTTGGGTCCAGAGGCCATCATGGAAACTGACTGTCCAGGCCCTTCTTCTCCACGAAACGTCCAGGCCGACGCCCTGTCCATTAGTGCAGTCAGGCTTCGCTGGCAGCCACCTGAAGATCCCAATGGAGGCATTGTAAAATACAGCATTGAATACCAGCCAGTGGGCCAGAGCAGCTTGCATCCTTGGGTAGACACAGACAATGGCAACAAAACCACAAAAGATGTAACATCCCTCAATGGGAGCACATTGTACCAATTCAGAGTGAGAGCTTTCTCTAAGGTACCTGGAGAGTGGAGCAGCTTCGTACAAGCTCAGACACCTGGAGAAGGATTATCCAGCTTTATTCCCACCACTCAGCAAGTGGGACGGCCGTTGGCTGAGGATCATCAACTTCTTTTTGCTGTGGTTGGGTCAGTGGCTGTGACTTGTGTGACCATTCTACTGGCTCTTCTGGCCCTCTTTTACATTCGTAAATCTGTCCTTAAAAGAAGACGGACATTCACCTATCAGTCTGGATCTGGTGAAGAGACTATCCTCCAGTTCAACTCAGGGACTCTCACACTTACCCGACGACCAAAGCCTTCCCCAGAGCCTCTTACCTATCCCATCCTGGAATGGGAGGATATAAAGTTTGAGGATGTCATCGGAGAAGGGAACTTCGGTCAGGTCATCAAGGCCATGGTCAAAAAAGATGGGATAAAAATGAGTGCTGCAATTAAAATGCTCAAGGAGTTCGCCTCAGAGAATGACCATCGAGACTTTGCTGGAGAATTGGAAGTGCTGTGCAAATTGGGACAacatacaaatattataaatcttattGGTGCCTGCGAGAACAGAGGTTACCTTTACATTGCTATTGAATATGCACCTTACGGAAATCTTTTGGACTTCCTAAGAAAGAGTCGAGTCCTAGAGACAGATCCAGCCTTCGCCAAGGAGCATGGCACAGCTTCAACACTCACTTCCCAGCAGCTCTTGCAGTTTGCTGCTGATGTAGCAACTGGCATGCATTACCTGAGTGACAAACAGTTCATCCACAGAGACTTGGCAGCCAGAAATGTACTTGTCGGAGATAACCTAGTTGCAAAAATTGCTGATTTTGGTCTCTCACGTGGTGAGGAAGTGTATGTGAAAAAAACCATGGGAAGACTGCCTGTGCGATGGATGGCTATTGAGTCTCTAAACTACAGTGTCTACACCACCAAGAGTGATGTATGGTCTTTTGGAGTTCTTCTATGGGAAATAGTGAGTTTAGGTGGGACGCCATACTGTGGGATGACCTGTGCTGAGCTCTATGAGAAGCTTCCCCAGGGATACAGAATGGAGCAGCCCAGAAACTGTGATGATGAAGTGTATGAACTTATGAGGCAGTGCTGGCGAGATAGACCTTATGAGCGACCGCCATTTTCACAAATATCTGTCCAGCTTAATAGGATGCAAGAGGCACGGAAGGCTTATGTCAACATGGCTCTCTTTGAGAACTTCacttatgctggaatagatgCTACCGCTGAAGAGGCCTGACTACTAGCCCCCCCAGACCCAAGAAGGGGTCATAGCCCAAGGGAGGCTAATCGCAGTAGGGCTCTGCGTTACTGTCACTTCCCTGTGGCCAGGTTCCATCATCGCTCAAAGAGACACTCCACCAAGGCCACATGGCTATAGAGAACAGACTGTGAAAGGACACTTCAGATTCAGGAAGGATTGATATCTCAGGGCATGTTGACCTTGGATTACTCAAGAGGAAATGGAACCTACGATATAAGCTACCATTGTAGCGCATCGGGTCTGTGGGGACTTTGCATTGACATCTTTTTACTGGGAggtttttgaaatgtaaataaatcaaatgcagTTCATACTATGGACAAAGGCGCCAGTATTATTAAATGTAGCACTTGAGAAAACGATGCATTATCCTTACTGAAAGTCATCTGTTCTGCTCATAAAATTAAGATTTGCTGTTAGTTTACTCATTTTCAGACCATCCAAGATGTACTGTGCATGAGTTGTTTTCTTCAGTTGGTAAGATGTTTTCTTCAGTTAAAAGTTTTCTGAATCTGTCCTTGGTGGCCCAGAAAACGCAAGTCAACCTCTATATGCAGGACAAAATTAATAACCTATGCTAATTGAGCTTTTGTGAAATGAAGCAATTGTCTGTGCAAGAAAAGGAACTATGTTTATAACCTAGTTTTCCTTAAAtgggtggtccacagtgtatttgtTTAAGGCTTGGCTGTGGATGCAAAGCAACTTCATTACTACTTAAACATTTAACATAGTTCATTAGTAGAAAATCCTAATATTTTTTCAGATATCTTACCTTGAatatatacagctactctgctaacatgaaaacggctgtcatatttcctagttcctccaaaagcctgccctcaagaggctctgattggtaaGCTAACATAATGTGATGTGATTCACGAATTCAGCTCCACGTCTCCAGGAAGAGTCACGTCCAGCCACTAGCATGCGCTGTGCCGCTGCTGTGTAAATACTGCCTGTCAGTGTAGCAGCTGTGTCAGTGTGAGCCTGAattagacagaaaatgaagaggatacagctgaacctcatgcctgctctctaaaataaatcTGACAAACATCTTTCATATAtcgggttataagcatgtgtatgtaaaatgaaacattcacatatcttttgtgagttcGTTATTTGAGATGTATAATGCAGGGAAAGCGGCCGCGTAGAAAGACACTGCAGCACTGGTGAAGATTGTAGGTGCTTACAGGggtttgatttatatatatgaatttgtagctaaattgttaatggtgccaaacagcatttcccattgtttacatacctgtttacgtccttgctacaacacCATTAACGCTAGACACTATGCATGTAAAAGATCAATTTCTACAAATTAAAATActcacaggttgtggctcacaatccacagctttgtctattatggttggagctgcttcgTCTTCGAGTGTTTTTAGTCGAATCCAGCACAGAACAGGGAgatattctggaagctgtcctttgtccaatgctagctatatatattttttttataattctctggaacatgatTAAATttaactgtaagcacttctgtctttgtgtcatgCCCTTTGGAagctcaaaaacaaacaaaacgagCTCTGTGGAAAAAGCAGCGTTTGAACAGGATTTTAGctttaacattacagcgcctctggccacgctcCTTCGCTACGCAGGGTGTATGCCATGGTGAATAACGtaaagcatttgtgatctcactaatccagatgtattttttgtagtcccaaaATTCAtccgctgtaggctttgctaagctaactctgtaaaagccaatgtcttctTTTTTTACTGAACTTTGAGTATATTACAAGTTACAAGAGattttgtttatgttcacacattaCACTTTAACTTAAGTTTAAAATAGGGTATGGTTGGGGACCACTCCTTTAATGTGTGTCATGACTTTATAGAATGTGTAAGCTTTCTAATGCGTGTAAATTGTTGAAATTACAGACGTCTCAATGAACCATCAGTAGCCatgattattaattttgttttacctgTATGCTTACCTGTATGAACTCACAAAGtgcctgtaactattgacttacaTTTTATGAATAACCTGGAACcacaatttcagctaaaaatcttcttcaaTGTTGTACtgcttaaatgtttaattttggtTAAACTATCACATTAAGTAGTAGGTCAGTGTACATAATGTTGATATTGTTTATCAGACCATACAAAAAACACTGAATAGGAATTCCTCcttaattgtaagtcgctttgaaaaatgcatctgctaaatgactaaatgtataaatattttacatcTATGTTGCTTTTTACATATGACATATGTTTGCCATGATTTAACCATCCAATAAGAATTTAAAGAACGTTAGAGAATGTGTTTACTTTGATAAATAAAGCATCGTCTTGGTGACAGGACTCATCACAAAGGCCTTTGAAGATGAGCAGAAACACTCCACTGATATGGAGCAGAAAGTACTGACACTTTCTTTCGTTTTCTTCAAGTAGTGGGCTTGAGGTCAAACCCCTTCCCTGCTGCAGCTTGCTGATCTGTCAAGAACATTTCCTCCAGTTCTGCCACAGGCTCAAGAGCTGTCAGTCACAATACTGCAGCTTAGTTTCCTTCTACAAAAACCTAAAAAATGTCTCCTTAAACTCCATTGTGAAGTGTTGCATtcactttatttacttattaaacgCTTCATTTTTGTTAGGCAAAAATCCTAGTTTGGTAGTATTTTTGGTATTTGGTGTCGCCATTAAATGTTTTTCCAtatttaagcaaaacaaaatggcaaataaaccttttttgtttACAGAGGAAACATTGAAATATTATGCAGTAAATCAATAGTTTAC

Function

GO:

id name namespace
GO:0002574 thrombocyte differentiation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko04630 JAK-STAT signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko01002 Peptidases and inhibitors
ko04050 Cytokine receptors
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-990415-55 Predicted to enable transmembrane receptor protein tyrosine kinase activity. Acts upstream of or within blood vessel development; endothelial cell-cell adhesion; and heart development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including angioblastic mesenchymal cell; cardiovascular system; intermediate cell mass of mesoderm; pharyngeal arch; and ventral mesoderm. Human ortholog(s) of this gene implicated in hereditary lymphedema. Orthologous to human TIE1 (tyrosine kinase with immunoglobulin like and EGF like domains 1).

Ensembl:

ensembl_id ENSDART00000191183

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064034 lncRNA downstream 59802 33918813 ~ 33921694 (-) False XLOC_032958
TCONS_00065184 lncRNA downstream 64774 33912876 ~ 33916722 (-) False XLOC_032957
TCONS_00064029 lncRNA downstream 64776 33912876 ~ 33916720 (-) False XLOC_032957
TCONS_00064028 lncRNA downstream 65926 33912876 ~ 33915570 (-) False XLOC_032957
TCONS_00065183 lncRNA downstream 771108 33190582 ~ 33210388 (-) True XLOC_032952
TCONS_00065186 lncRNA upstream 149790 34158617 ~ 34177898 (-) True XLOC_032962
TCONS_00065187 lncRNA upstream 640968 34649795 ~ 34652139 (-) True XLOC_032965
TCONS_00064749 lncRNA upstream 808356 34817183 ~ 34818189 (-) True XLOC_032966
TCONS_00065188 lncRNA upstream 843067 34851894 ~ 34860590 (-) True XLOC_032968
TCONS_00064066 lncRNA upstream 938347 34947174 ~ 34954345 (-) False XLOC_032970
TCONS_00064044 mRNA downstream 615 33949519 ~ 33980881 (-) False XLOC_032960
TCONS_00064042 mRNA downstream 2736 33949280 ~ 33978760 (-) False XLOC_032960
TCONS_00064043 mRNA downstream 2874 33949519 ~ 33978622 (-) False XLOC_032960
TCONS_00064041 mRNA downstream 49800 33926829 ~ 33931696 (-) True XLOC_032959
TCONS_00064040 mRNA downstream 56567 33921516 ~ 33924929 (-) True XLOC_032958
TCONS_00064050 mRNA upstream 129559 34138386 ~ 34141935 (-) True XLOC_032961
TCONS_00064051 mRNA upstream 205144 34213971 ~ 34220641 (-) True XLOC_032963
TCONS_00064053 mRNA upstream 814894 34823721 ~ 34838413 (-) False XLOC_032967
TCONS_00064054 mRNA upstream 816927 34825754 ~ 34838397 (-) False XLOC_032967
TCONS_00064058 mRNA upstream 838449 34847276 ~ 34860574 (-) False XLOC_032968
TCONS_00064031 other downstream 64774 33913366 ~ 33916722 (-) False XLOC_032957
TCONS_00064030 other downstream 64782 33913187 ~ 33916714 (-) False XLOC_032957
TCONS_00064032 other downstream 64783 33913795 ~ 33916713 (-) False XLOC_032957
TCONS_00064023 other downstream 64794 33911154 ~ 33916702 (-) False XLOC_032957
TCONS_00064026 other downstream 64836 33912189 ~ 33916660 (-) False XLOC_032957
TCONS_00064052 other upstream 635426 34644253 ~ 34644370 (-) True XLOC_032964
TCONS_00064056 other upstream 817828 34826655 ~ 34832346 (-) False XLOC_032967
TCONS_00064055 other upstream 817828 34826655 ~ 34832346 (-) False XLOC_032967
TCONS_00064057 other upstream 824321 34833148 ~ 34838299 (-) True XLOC_032967
TCONS_00064061 other upstream 923123 34931950 ~ 34938693 (-) False XLOC_032969

Expression Profile

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