RNA id: TCONS_00065187


Basic Information

Item Value
RNA id TCONS_00065187
length 2345
lncRNA type intronic
GC content 0.39
exon number 1
gene id XLOC_032965
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 34649795 ~ 34652139 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agactgctgggtaacaaaattgggttgattcaacccaatttgggttgaaaaTCGATCTTTATCTGTAACCCAGCAGTGCTGGGTTGGGAACGCGGACGTGAAAGAGAGCACGCACGTCACGTCAACATGCAGGGACATCAACGTGAGAAACCGCCATTTTCTTTGCGCTGTCTTTGAGGGGAAGCGAGTGAAATTCTGTGTGAGACGTAAGTTATTTAgtgtgtatttaacaattttcataagaaataacacacttagtttacttagtataatatacacgcgcttttttttctgtttctccgcCTGATGGCCGACTTGTTGCTCCGCCTCACGCTGACCTGTGCTCGCCTTATGGCTGAACTGTTGCTCCGAGTCCGCCTGACGAGCCACCTGTTTCTCCGGatctgtttctccgcctaacggcgacctgtttctccggacctgtttctccgcctaacggcgacctgtttctccggacctgtttctccgaCTAACGCGCGAGCTGTTGCTCCGCCTAACGCCTGACCTGTGCTCGCCTCACGCCCGACCTGTTGCTCCGCCTCACGCCCAGCCTGTTGATCGGTGGACGGGTAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGGTAACTAATGAAACTAACGTGAAGCATGTTTGATGAccactttataaacacaacacctaggataatttaggagcttttaattgtaataaaatgccttttgaatgacacagatttttatgttggctaggtgatgacagtaagtaacgttactgtgatttgtgatctttctggggtgttaactgtaaagcagtaagtagtatttttactcttgtatttcttaagtttgttcatggatttttgtgacaatactttgatgcataagtgttgaattcagcttctaacaatgttttttttttaaatctaaatatatacaataattgtcctgctctgcatgtacattttgtttagctgtacatctgtacattgaatagcaaatgttattaatttactatgagcattttacattctagATGTGATTTGAGCTATCTTTAATTAATCCTGTATGTAAGGGTCGTTTCATGCTAACGGAAATGTCTGAGCTAAGGTTAATTCCAACCTAATCATCTtcgactgcaaaaagaaaaagtttgaccACTGTTTTATGTGACACCCtggataattattatcatttaggagtatttttgtgatatagtggctaacatgatctttttttacttaattttgcttaaacgcttttatctgttattctttttcagatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaaggtatgtaataatattttacttggttcattgtaatcattagggctgcccttgtctaaacatttgtctggttgacttgtgatgttcatttgaagcattagttgaataattacagatttattaataaaccatttattcattaattcattttctttttgactcagtccctttattaatctggggtcgccacagcggaatgaatcgccaacttatccagcatattttttacacagcggattcatgcagcatacattgactttgccagtgtggactttttttctgcaactagtgggtagcacattcgcctcatagCAACAAGGCCACTTGATcgatccttggctgggtcaataggcctttctgtgtggagtttgcatgttctccccgtgttcgcgtgggtttcctccaggtgccccggtttccaaagacgtggtaaaggtgaattaagtagactaaattgtcaatggtgtatgtgtgtgaatgagtatttgtttcctagtgatgggttgcagctgaaagggcattcgctgcataaaacttatgctggatatgttggtggttcattccattgtggttaccccagattaataaagcgacaaagctaaaaagaaaatgaatgaatgaataataaatttttagttgactaatggttattcaattattagggggcagccctagtaatcattagccacttcaacactttaaactgagagattgaactctaatgccaatttgtttttgtctggttattttttaaaatctgctgttcatgcaaccagtgacattctcttgttttatttttagcacagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGGTAAGGATTCAATTAAAGGTTTCTCGATGcataatgatgcatttaatgcataatgattgtcttagttattttattaacaatgaaaatgttatttttatgtttgttattagggtggcatgggggcgcagtgggtagtgctg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065186 lncRNA downstream 471897 34158617 ~ 34177898 (-) True XLOC_032962
TCONS_00065185 lncRNA downstream 665130 33983870 ~ 33984665 (-) True XLOC_032960
TCONS_00064034 lncRNA downstream 728101 33918813 ~ 33921694 (-) False XLOC_032958
TCONS_00065184 lncRNA downstream 733073 33912876 ~ 33916722 (-) False XLOC_032957
TCONS_00064029 lncRNA downstream 733075 33912876 ~ 33916720 (-) False XLOC_032957
TCONS_00064749 lncRNA upstream 165044 34817183 ~ 34818189 (-) True XLOC_032966
TCONS_00065188 lncRNA upstream 199755 34851894 ~ 34860590 (-) True XLOC_032968
TCONS_00064066 lncRNA upstream 295035 34947174 ~ 34954345 (-) False XLOC_032970
TCONS_00065189 lncRNA upstream 295035 34947174 ~ 34957476 (-) False XLOC_032970
TCONS_00064067 lncRNA upstream 299438 34951577 ~ 34957476 (-) True XLOC_032970
TCONS_00064051 mRNA downstream 429154 34213971 ~ 34220641 (-) True XLOC_032963
TCONS_00064050 mRNA downstream 507860 34138386 ~ 34141935 (-) True XLOC_032961
TCONS_00064047 mRNA downstream 640894 33979523 ~ 34008901 (-) False XLOC_032960
TCONS_00064049 mRNA downstream 640916 33983674 ~ 34008879 (-) False XLOC_032960
TCONS_00064048 mRNA downstream 640968 33981496 ~ 34008827 (-) False XLOC_032960
TCONS_00064053 mRNA upstream 171582 34823721 ~ 34838413 (-) False XLOC_032967
TCONS_00064054 mRNA upstream 173615 34825754 ~ 34838397 (-) False XLOC_032967
TCONS_00064058 mRNA upstream 195137 34847276 ~ 34860574 (-) False XLOC_032968
TCONS_00064059 mRNA upstream 279458 34931597 ~ 34938746 (-) False XLOC_032969
TCONS_00064060 mRNA upstream 279461 34931600 ~ 34938678 (-) False XLOC_032969
TCONS_00064052 other downstream 5425 34644253 ~ 34644370 (-) True XLOC_032964
TCONS_00064031 other downstream 733073 33913366 ~ 33916722 (-) False XLOC_032957
TCONS_00064030 other downstream 733081 33913187 ~ 33916714 (-) False XLOC_032957
TCONS_00064032 other downstream 733082 33913795 ~ 33916713 (-) False XLOC_032957
TCONS_00064023 other downstream 733093 33911154 ~ 33916702 (-) False XLOC_032957
TCONS_00064056 other upstream 174516 34826655 ~ 34832346 (-) False XLOC_032967
TCONS_00064055 other upstream 174516 34826655 ~ 34832346 (-) False XLOC_032967
TCONS_00064057 other upstream 181009 34833148 ~ 34838299 (-) True XLOC_032967
TCONS_00064061 other upstream 279811 34931950 ~ 34938693 (-) False XLOC_032969
TCONS_00064062 other upstream 280484 34932623 ~ 34938707 (-) False XLOC_032969

Expression Profile

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