RNA id: TCONS_00064749


Basic Information

Item Value
RNA id TCONS_00064749
length 653
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_032966
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 34817183 ~ 34818189 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tcagctaaactctcccactctatttttttcttttgttgttaattccggagaacaaacttgcaaataacaccgcttttctccggtctacctccgaaagcacccagccggcacacgaccgaccttcaacgttgaaatatggttgaaataaggtcagatgtgttttgaacgttgaaataatgttgatagaacgtttaatgttgaatggttgaaaaacagcctgcatatgacaaggcttcaacgttgaaatgtggttgaaaatacgtcagttgttgctttaatgttgaaacaatgttgaatgataaatggttgaaaaaagttacagaaatccttgtacaaatcaacgttgacattttttttatcatgatctgtatgttgaattaacgtcatggcttcacccaatattcaacatgtttggttaccatggtatcggaggactcggcgcacgcggccacgcgcagcgcttcacttcacttaattacgaacacctgacctgcagtgcagcagaattcagagacatgtaacttaacgtactccagagacgcactaacttgcacagcattgaatggaaaaggctttgtccatgtaagtttactttacctttaactaAGCTAGCctatctgttaaatcttcttgttgctttggttggtgatatt

Function

GO:

id name namespace
GO:0050953 sensory perception of light stimulus biological_process
GO:0007601 visual perception biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065187 lncRNA downstream 165044 34649795 ~ 34652139 (-) True XLOC_032965
TCONS_00065186 lncRNA downstream 639285 34158617 ~ 34177898 (-) True XLOC_032962
TCONS_00065185 lncRNA downstream 832518 33983870 ~ 33984665 (-) True XLOC_032960
TCONS_00064034 lncRNA downstream 895489 33918813 ~ 33921694 (-) False XLOC_032958
TCONS_00065184 lncRNA downstream 900461 33912876 ~ 33916722 (-) False XLOC_032957
TCONS_00065188 lncRNA upstream 33705 34851894 ~ 34860590 (-) True XLOC_032968
TCONS_00064066 lncRNA upstream 128985 34947174 ~ 34954345 (-) False XLOC_032970
TCONS_00065189 lncRNA upstream 128985 34947174 ~ 34957476 (-) False XLOC_032970
TCONS_00064067 lncRNA upstream 133388 34951577 ~ 34957476 (-) True XLOC_032970
TCONS_00064073 lncRNA upstream 218326 35036515 ~ 35039045 (-) False XLOC_032972
TCONS_00064051 mRNA downstream 596542 34213971 ~ 34220641 (-) True XLOC_032963
TCONS_00064050 mRNA downstream 675248 34138386 ~ 34141935 (-) True XLOC_032961
TCONS_00064047 mRNA downstream 808282 33979523 ~ 34008901 (-) False XLOC_032960
TCONS_00064053 mRNA upstream 5532 34823721 ~ 34838413 (-) False XLOC_032967
TCONS_00064054 mRNA upstream 7565 34825754 ~ 34838397 (-) False XLOC_032967
TCONS_00064058 mRNA upstream 29087 34847276 ~ 34860574 (-) False XLOC_032968
TCONS_00064059 mRNA upstream 113408 34931597 ~ 34938746 (-) False XLOC_032969
TCONS_00064060 mRNA upstream 113411 34931600 ~ 34938678 (-) False XLOC_032969
TCONS_00064052 other downstream 172813 34644253 ~ 34644370 (-) True XLOC_032964
TCONS_00064031 other downstream 900461 33913366 ~ 33916722 (-) False XLOC_032957
TCONS_00064030 other downstream 900469 33913187 ~ 33916714 (-) False XLOC_032957
TCONS_00064056 other upstream 8466 34826655 ~ 34832346 (-) False XLOC_032967
TCONS_00064055 other upstream 8466 34826655 ~ 34832346 (-) False XLOC_032967
TCONS_00064057 other upstream 14959 34833148 ~ 34838299 (-) True XLOC_032967
TCONS_00064061 other upstream 113761 34931950 ~ 34938693 (-) False XLOC_032969
TCONS_00064062 other upstream 114434 34932623 ~ 34938707 (-) False XLOC_032969

Expression Profile

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