RNA id: TCONS_00006396


Basic Information

Item Value
RNA id TCONS_00006396
length 6738
RNA type mRNA
GC content 0.44
exon number 34
gene id XLOC_003245
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11120532 ~ 11193205 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCATCTCATAGGCTGGCTTTTGCGCAATGACGCGCCTGacagctggccaatcagagcagccCTTCTTCTGCGTAGcaataaacagaaacagaaaatGTTTCAGGAGTGGCGAGGCAACATCGGTTAAGAGGGATTTTCTGCCACTTACCAACGTGAGAGAACACAGACCCGGCCTGTGAACGCGTATGTAGTCTGGGAGAAACGCATGACTGCGGCGAAGTGGCGTTGTTTACATTTGTGACTATGTATTGGAGCACGCAGCTGCTGTTTTCCTCTATAATATTCCTACTCTCCGGAGGTCATTTAGGAAGTTGCGCATCTGCTGCAAACAGCGGAGATGACACTTTCAAAATTCAGCACAGTACCGATGGGAAATGCCTCCTGGTCCAGAATGGAGCCTTGAAGTTGGGGAATTGTTCATCCGTCCCGGCTGTGTTATGGAAGTGGGGATCGGCGCACAGGCTTTTCCACATGGAGTCCTCCATGTGTCTGGGCCTGGAGGTGCGAACCAAAACGGTGACCCTGTTCAGCTGTGACTCTACTGAGATTCTGCGCTGGAAGTGCTATGAGGATGTCATCTACACTGAATACCAAATGAAACTCAGCGTTGGGGCTGGTGAATCTGTAATTGCCAAAAGAGATGGACAGGACACTTGGAAAAGAGAAGGGAGCACGGATAACATCTGTCAGCGGACGTATCGAAAAATGCACACAAGTGGGGGTAATTCTAAGGGAGCACCCTGTGAGTTCCCCTTCCTCTATAATGGGACGTGGCACCACAGCTGTCTGCCCCCCACTGATGAAAATACACTGGAGTGGTGCTCTACTACTGCAAACTATGATCAAGAGCAGAAGTGGGGGAATTGTCTGAAATATGTGGAAGGATGTTCTTCTTTATGGGAGAAAGAACCTGTGACTGGACGCTGCTATCAGGTGGTGTCCACAGCTGTGGTGACCTGGCATGAGGCGCGGGACGCTTGTCGCAGTCAAGGTGGAGATTTGCTCAGCTTGTCCAGCCCTCAGGAGCTCCAGTTCTTTAAAGATCGCAAAGATTTGCCCAGCAAGCTCTGGATCGGAGTGAACCATCTGGATTGGATGCAGGGTTGGCAGTGGTCTGATGGATCGCCTTTATCGTTTGCCCCATGGGAAACAGGCATCCCTATCAGATCCCTTTTATCAGATGAAGACTGTGGTGTCCTGAAGGAGTCGCTGCGTTTCGGTGCAGAGACATGTGAAAACCGCCTTCCATTCATCTGCATGAAAAACGAAAACGACACTGAGAGCACAGTCAGGGATGTGTATAAACCTACGAATTGTAGTGATGGTTGGATTGGGTGGAAAGGATACTGTTATAAACTTCACAGTGCAGAGTCCAAAATGTCTCAACATGAAGCTCTGGATTTGTGTAAAATGGATGATGCTAAGCTTGCAAGTTTACACAGTTTGGATGATATAGAAATGCTGCATACAAACTTTCATGGAGATCTGAAGACAGAGGTGTGGATTGGTCTTTGGGGTAATGGAAGCACCTCAGTCTTTGAATGGGTCGATAAAGCTCCAGTCTCTTTCACATACTGGGCCAGAGCTCAACCTCCACCACTGCTACCAAATACCATCAACTGTGTGTACTACTCAGGAGAGCATCATACGTGGTCTGTTTCTGACTGTGATAAGCCACGGGCTTATATGTGTATGAGGAACTCGCAGAATGTGAATGAAAGTGCAGCAGAGGAAGGCTGTCCTCCAGATGGGAATTGGAAGAGACATGGTGATGCTTGCTATACAGTGGACACTAATCTAGTGTTCTATAAAAACAGCTGCCACATCTCCATTAATAACAGATTTGAACAGGCCTTCATTAACAGTCTCCTGAAAGAGCATATCAGCACCGAGGTGTTGTATTTCTGGACCGGGCTACAGGACTCTAAAGGGTCCGGGGAGTACCAGTGGTTCAGTCAGGATGAAACCGCAGATCAAGTCACTTACACCAACTGGAAATGGCTTGAACCAGcttctgCTGGTGGATGTGTGGTGATGTCTTCTGGCAATCCTTTGGGGCGATGGGCTGTAAAGAACTGCACTTCGTTCAAGGCTGGAAATATCTGTAAGAAACCCATAAAATCGAAGGTCCAACCCATCCCAGACCCTTTTGTGCCAAACCCCAATGCTTCCTGCGCGCCTGGATGGGTCTCAAGAGAAGGCCTGAACTACTGTTACAAGGTGTTTCACGAGGAGCGTTTGACCCGGAAGCGCTCATGGGAAGAGGCAGAGCGTTTCTGTGAGGCATTAGGTGGTCACCTGCCTAGTTTTACTGAGGTTAAAGACATGGAAGCCCTACATTTAATCTTGAGAAACTCTGTCAGTAATAACCGTTTTTTCTGGGTGGGACTAAATCGGCGAAATCCAAATACCAACAATAACTGGGAGTGGAGTGACGGGCGTCCGGTCTCCATGATGATCTTTCCTGAGGAGTTTAAAGAAGATGATGATTATAACAGGGACTGCATTGCGTTTAAGACTATGAAACCAACCTACAAGCCGTTTCTCTTCCTTCTTATCCACAAAGCATCTCCACGGCCTTTTTATCCCAGCACCTTTCATTGCGATGCCAAACTGGAATGGGTGTGTCAGATACCACGAGGTCAAACTCCAAAAACCCCAGAATGGTACAACCCAGATGGGCACCATAACACATCAGCTTTTATAGATGGCCAGGAGTTTTGGTTTGTGACGGAGCCGAAGTTGTCTTATGAGGAGGCTGTGTTGTACtgcagcagcaacaacagcaaACTGGCCTCACCGGACACCTTAAAAGCAGCCCTCCATCTTCAGGAACAGATATCTGAGCATTCAGGACCACATTTTATAAGGTGGTGGGCAGACCTTCGTTACCCTGGTCCTCATGTTCCCTTTATGTTCAGCCACATGCGTTATTATGAGTCATCATTCCGTGGGCCGTGTCCTTCTATCACTCCTGTCTCTCTAGATCCAGGTTACAGCCGAATATGTAATGAAAAACAGCCATTTGTGTGCGAAACCCTGAATGTCACTTCTGTGGAGAAAGGAACCCCAGAACCACATCCAGTCGGCACCCAATGTGGAGGCAATACCTATCACTTCAAAAACAAGTGCTACCAGATTTTATCAGAATCTTATTTTCAAAACTTTAAAGAAGCGAATGAGTTTTGCCAGCAACTGAAAGGCTCATTGCTTACTATATCCGACCAAGTCGAACAGGATTTCATCACTACATTGTTACCAAAGTTGCCTAATCAGCCTCGTAAAGTCTGGATTGGCCTGAAATTCAAGCGTCCTGACACTCAGTGGGTGGACAACTCGCCGATTGAATATCTCAACTTCAATCCGCTCCTGCATGGCCAGTTTCGATCCATTTTCATCAATCCTTTTGAACATGACCAGCTGGAACTGTGTGCCTACATGTACAATGATGACCATTCAGACATGATGGGCACCTGGGACTACACCTCCTGCACCGACCGCCAGTTTAACAGCATCTGCCAGTATTTTGCAGATAAACTTGAGGAGCCCAAGCCTGAAAATAACTTCACGGTtcaaaatcacacatttaaaGTGGTACAGCAGGACAATTTAACATGGGCAGATGCTCTTCAGTTGTGCCGGAGCTTCAATTTGGAATTAGCCAGTGTCCCGAATGCATATGTCCAGGCAGTGCTCACAACACAGGTTTCTCGAAGAGGAAAGCCTCTTTGGATCGGACTCTTTAGCGAAGACgacGGGGAGCACTACAAGTGGACGGACAACAGCCACTCCGAGTTTAATCGCTGGACTTCTGAAGCCACCGAAGGCTCCTGTGTGTTTCTGGACACTGATGGCTTCTGGAAGGCCACAGACTGTGAGGAAGAGCTTTCTGGAGCGATCTGCCACATCCCATCCAGTGAGGCTCATTTAATCCACTGTTTATTCATCTCAGAAATACTACAGAAACTACTACAGTACCTGTGCAGTACCTGTTCTAAATCTACTTTTCCTATAGTTGATAAGACCATCACACCTGACAAACCATGCCATCATAAAAGCAATGGCCAGAGCTGGATTCGTTTTAAGAAGAACTGCTATACATTACTGCTGATGTCCTCCAGATGGGGCAACGGCGACATCAGTGACCATAAGATCTGCAGCACTCTCGACAAGCATGGAGAAATCTTGACCATTCGTGATGAAGCTGAGAATAACTTCATTATGCAGCAGTTGAAGCCATTCAAAGACTTGGCAATGTTTGTTTGGCTGGGAATGAGCACAAACAAGACAGATGAGCAGCTGAAATGGCTGGATGGCACTTATGTGCAGTTCTCCAACTGGAAATATGGTGAAAGACCGAACATGACAAACTCCTTCATTGCCGGCCTCAACTTGAATGGGGAATGGGAAACCATTTCAAAACAACATCTCGATGTTTTTAAACAGCAAAGTATTGTGGTGTGCAAGATTGAAAACGATACCAAAGATGAATTCCTGAAGGGTGTGGTCGACATTAATACTCCACAAGACATAAGTTATCGTCGAGTGGCTAAGAAATTGAACTGGTATCAGGCACTTCAAGAGTGTGGCAGTAATGGCGGCCATCTTGCCAGCATTACTGACAAAACCACTAATGAAAACATGGCACTGATTGCCAAAAGGGATGGCTTTTCACTGTGGATCGGTCTCTCCAAACAAGATGTAAGCAGATGGCCATTTGAGTGGTCAGATGGGACCGCTGTGAAATTCAAAACAGATGGATTTGAGGATGACGGGGATGATTCAGAGGAAAAGTGTGTGTTTATTGACTCCACAGGCAACTGGTCAGCCGTCAACTGCCATGCAACACAACAAGGGGCCATCTGTTATAACCACCTGAATGAGGgaacttCTGATCGCTTTTCTAAATCCAGCAGCAGTTGTCCCAAGAGTGATGGTCAGTCCTCGTGGGTCCTGTTTAAAGATCACTGTTATAATTTCAATACATACAACTTCTCTGTCTTCACCATGGATGATGCTAAGAATGTGTGTCAGACTCTGGATTCTTCATCCAATCTGTTAACCATCAAGAGTAAAGAGGAGAATGATTTTGTTTCTGATTATATCAATAAAAACCCTTCCATCACCAGTCGAGTGTGGCTGGCGCTCATCGTTGACGCCaaagGTAATCCCACGGGCTGGCAGGATGGCAGTGAACTTGACTTTTCCAGCTGGGATTTGTCAAATTCAAAGGCTCAGCATTCTCTTGACGGCACACAGTTGTGTGCAGTCATGCTCTCCAGCAGCGGCTCCTGGACTCAAGCCTCCTGCTCCAACAGCCGAAGCAGAGTCGTCTGCAAAGCCCCTGCCCaTCCAGGAACCCCCGTGGCTCTGATCTTCTTCATCATCATAGTCCTCATCCTCGCTGCTGCTGTTGGCTTCATACTGTACCAGAAAAACAAGCACCGCTTCCATTCCCCTGTACGTTACCAGCGCAACTTCGATGACGCAGACAGTACAAGCATGATCAATGATGCAGATTAACTTAACCAAATGAAGCAGTAGCTGTATTAATGTGCCTTTACTATAAACACTCCTCTACGACGTCAACACAAACTCCCGCCTCAGTGCTGCAAAACATACTTATTTATTGATATTCAGCAAACATCTTTACTGTCTGGGTAAATTTAAAAAGGAGTGACATTTATTAGAgggtttttttaaattgttgttgtttaaattaaaatgtttgaaaatctTGTGTATATTTTAATGGGAGGAATGCAGGTACTTACTGTACTAAATCTGGTTCTCTTGAAGTGATCAGGGTCAGGGTTTTTCACTCCTGTTGAGCAGCACTGAAATTGAACTGAAAGCttttaagaatgtacattttagaTTTCTAATTTCCTTTTTGAAGATGTGATTTTAACAGAGCAAAACTCTTATTTTATGAATTCAAAACTAcgttctgtgcttttgtttttcatttgatttctGAATGCCACTCTGCAATGTTCATAGATTTGTTTAGATATCAGGCAGTAGAACATTCCTTTCAAACTCGCTATAATGGTGTTTTTTCCCACACTGTATTTTCCTGTGATGGTGTATTACAGCtttgtttgcatttattacagtaatattGAAGTGCTGTACAACATCTTATTGCAGCATGCTAAAGCAGTGCACCGAGTGCTGAATGATAACATGTACAGTCACTAAGGATATCTATGCACTCTTATGCTTAATTCACTCAAACTACTGAGATCTGATGCACTTTAACTAGCTGTTTGAAACTAACTTCAAGCAGAAATTACAAATTAGTTTAGTGAAGGGTTTAGTACATTCTTTGTAAATATttgtgttgttgctgtttttgattgcttgtttgttgtattttttatttttttcaaactaaGCCAAAGATGCTTTGGGAAGTGATGGTGATATACTGTATTGCAAACCCACAAATCTCCACTCAAGACGATGATGCTTTTGCCAAGAATTTTTTGTGATCTTTGTTTTTGATTTGATCACATATCCGCTCTTCCTCTGTTTTGACCACCGCAGAAGATGCTCAATAAATACATTGTATGTGTTCAAATTTTGTCATTTGTtggttaatattaatataaatgctTTTAAGTCATAAAAATTAGTTCAAATTTTGGTGACTTAGTTGCAATATTTATTGATATTGATACTGATTTAATTTAATCCAGACCAGAATCCAGAAGTTATATGTGGCCTGTAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG:

id description
ko04054 Pattern recognition receptors
ko04090 CD molecules
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-050309-166 Predicted to enable signaling receptor activity. Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Is expressed in heart and macrophage. Orthologous to several human genes including LY75-CD302 (LY75-CD302 readthrough).

Ensembl:

ensembl_id ENSDART00000189872

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008390 lncRNA upstream 54740 11065500 ~ 11065792 (+) True XLOC_003244
TCONS_00008552 lncRNA upstream 447524 10669135 ~ 10673008 (+) False XLOC_003241
TCONS_00008553 lncRNA upstream 447524 10669452 ~ 10673008 (+) True XLOC_003241
TCONS_00006385 lncRNA upstream 583129 10535456 ~ 10537403 (+) True XLOC_003239
TCONS_00008551 lncRNA upstream 1517462 9601745 ~ 9603070 (+) True XLOC_003237
TCONS_00006406 lncRNA downstream 46243 11239448 ~ 11240944 (+) True XLOC_003247
TCONS_00006410 lncRNA downstream 74701 11267906 ~ 11272314 (+) False XLOC_003248
TCONS_00006420 lncRNA downstream 160254 11353459 ~ 11380887 (+) True XLOC_003252
TCONS_00008391 lncRNA downstream 166216 11359421 ~ 11359715 (+) True XLOC_003253
TCONS_00006441 lncRNA downstream 310809 11504014 ~ 11513412 (+) False XLOC_003268
TCONS_00006394 mRNA upstream 10569 11030908 ~ 11109963 (+) False XLOC_003244
TCONS_00006392 mRNA upstream 45427 11021396 ~ 11075105 (+) False XLOC_003244
TCONS_00006393 mRNA upstream 81054 11021735 ~ 11039478 (+) False XLOC_003244
TCONS_00006389 mRNA upstream 99675 10975012 ~ 11020857 (+) False XLOC_003243
TCONS_00006391 mRNA upstream 101203 10984293 ~ 11019329 (+) True XLOC_003243
TCONS_00006400 mRNA downstream 7345 11200550 ~ 11262062 (+) False XLOC_003247
TCONS_00006399 mRNA downstream 7345 11200550 ~ 11262062 (+) False XLOC_003247
TCONS_00006402 mRNA downstream 7891 11201096 ~ 11260870 (+) False XLOC_003247
TCONS_00006401 mRNA downstream 7891 11201096 ~ 11260870 (+) False XLOC_003247
TCONS_00006403 mRNA downstream 7985 11201190 ~ 11260855 (+) False XLOC_003247
TCONS_00006384 other upstream 1221902 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006353 other upstream 3846154 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 3969626 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 3969892 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 3970166 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006409 other downstream 74685 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 78729 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 152598 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 179681 11372886 ~ 11373182 (+) True XLOC_003255
TCONS_00006426 other downstream 193157 11386362 ~ 11386658 (+) True XLOC_003257

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000056_01804273_01835065.mRNA True 5530 mRNA 0.46 33 CI01000056 1804204 ~ 1835717 (+)