RNA id: TCONS_00064055


Basic Information

Item Value
RNA id TCONS_00064055
length 773
RNA type processed_transcript
GC content 0.45
exon number 6
gene id XLOC_032967
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 34823721 ~ 34838413 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGAAAAGGTTGTGGAGTTTTTAACAGAAGCCTCTAAACGCAGCGGAGATGAAGCTGGTGTCGACGCCATTCCTGAAGGATCTCACATCAAAGACAATGAACAGGCTCTCTATGAATTGTTTAAATGCAACTTTAATGCAGATGAAGCTTTAAAAAGGCTGAAATTTGATGTAAAGCCTGCTAAAGAGGAAATGTCAGTTTGGACGGAAGAGGAGTGTCGAGGTTTTGAGCAGGGACTCAAAGATTATGGAAAAGATTTCAGCTCAATACAAGCAAATAAGATCAAGCTTGGGAAAAGAAAATACAGCCTTCGTCCTGGAGTTTTGGATTATATGGAGTGTTTTTTGGATGAGAAGGAAAGCTCTGAGTCTGGTGGATCTTCTTTATCACTTCCTACCACATCAAACAACAGCAAAAACCCACTGGAGCCAGAAAGTGACTCTAACGCTCAGAATGGTGTAGAGAACCATTCCTCCGAGCCTCTTCTCTGTGTCAAAGATGAGACTTCTCATACAAACGGCTCCACCGCACGTCCAGAAATATCCATAACACACACACCACCCGACTGTAACCTCAACATGAGCAGCCCAAACACACGAATAGTGGAGATCACAGTCATGCAGGAGGAACAACCTCTGAAGAAGCTTAGGATTGAGACAGACCCAAACACTGAAGTCGCCCTCAACAAAGCTGAAATCGTCTGACTCGCCAGCAAATCCCAGAACTCCTGACCTCAGATAGCCTGCCCTGTTTTCAGCATGACGGTAGctgag

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0016575 histone deacetylation biological_process
GO:0017053 transcription repressor complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0042826 histone deacetylase binding molecular_function
GO:0003714 transcription corepressor activity molecular_function
GO:0001103 RNA polymerase II repressing transcription factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-409 Predicted to enable histone deacetylase binding activity and transcription corepressor activity. Predicted to be involved in histone deacetylation and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of transcription repressor complex. Predicted to be active in nucleoplasm. Orthologous to human MIER1 (MIER1 transcriptional regulator).

Ensembl:

ensembl_id ENSDART00000133428

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064749 lncRNA downstream 8466 34817183 ~ 34818189 (-) True XLOC_032966
TCONS_00065187 lncRNA downstream 174516 34649795 ~ 34652139 (-) True XLOC_032965
TCONS_00065186 lncRNA downstream 648757 34158617 ~ 34177898 (-) True XLOC_032962
TCONS_00065185 lncRNA downstream 841990 33983870 ~ 33984665 (-) True XLOC_032960
TCONS_00064034 lncRNA downstream 904961 33918813 ~ 33921694 (-) False XLOC_032958
TCONS_00065188 lncRNA upstream 19548 34851894 ~ 34860590 (-) True XLOC_032968
TCONS_00064066 lncRNA upstream 114828 34947174 ~ 34954345 (-) False XLOC_032970
TCONS_00065189 lncRNA upstream 114828 34947174 ~ 34957476 (-) False XLOC_032970
TCONS_00064067 lncRNA upstream 119231 34951577 ~ 34957476 (-) True XLOC_032970
TCONS_00064073 lncRNA upstream 204169 35036515 ~ 35039045 (-) False XLOC_032972
TCONS_00064051 mRNA downstream 606014 34213971 ~ 34220641 (-) True XLOC_032963
TCONS_00064050 mRNA downstream 684720 34138386 ~ 34141935 (-) True XLOC_032961
TCONS_00064047 mRNA downstream 817754 33979523 ~ 34008901 (-) False XLOC_032960
TCONS_00064058 mRNA upstream 14930 34847276 ~ 34860574 (-) False XLOC_032968
TCONS_00064059 mRNA upstream 99251 34931597 ~ 34938746 (-) False XLOC_032969
TCONS_00064060 mRNA upstream 99254 34931600 ~ 34938678 (-) False XLOC_032969
TCONS_00064065 mRNA upstream 111005 34943351 ~ 34958274 (-) False XLOC_032970
TCONS_00064068 mRNA upstream 127679 34960025 ~ 35032792 (-) True XLOC_032971
TCONS_00064052 other downstream 182285 34644253 ~ 34644370 (-) True XLOC_032964
TCONS_00064031 other downstream 909933 33913366 ~ 33916722 (-) False XLOC_032957
TCONS_00064030 other downstream 909941 33913187 ~ 33916714 (-) False XLOC_032957
TCONS_00064057 other upstream 802 34833148 ~ 34838299 (-) True XLOC_032967
TCONS_00064061 other upstream 99604 34931950 ~ 34938693 (-) False XLOC_032969
TCONS_00064062 other upstream 100277 34932623 ~ 34938707 (-) False XLOC_032969
TCONS_00064063 other upstream 100610 34932956 ~ 34938693 (-) False XLOC_032969
TCONS_00064064 other upstream 101240 34933586 ~ 34938686 (-) True XLOC_032969

Expression Profile

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