RNA id: TCONS_00064066


Basic Information

Item Value
RNA id TCONS_00064066
length 718
lncRNA type retained_intron
GC content 0.42
exon number 5
gene id XLOC_032970
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 34943351 ~ 34958274 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attattttgacttcaactgtagatgtaGTCATTATTTTCTCTTGTAAACTATATGTAAACAATTAAACAGGGTTGATGGGACTATATGACTATATATTACGACTAAAGCACATTTGAATTACTTCTTTGATTATTCGTTTTTCTCATTAACAGGTTTAACAGATTGGACTATCTGTATCTCAATGCTGGAATCATGCCTAATCCCACGGTGGATCACGTAGCCTTTTATCGGGGCCTGTTTTCTAGAAATGCGATTAAAATGTTGACCACGGGGGAGGGTATTCTGACCCAGGAAGATAAGGTCACACCCATTGGTTTGCAGGAGGTGTTTGCTACTAATCTTTTTGGTCATTTCCTTCTGGTGAAAGAACTGGAGCCTTTATTGTGCCAGACAGAGCACAATTCTTTAGTCATCTGGACGTCCTCCAGTAATGCCCAGCGATCCTCCTTTAATCTCGAAGATGTGCAGCATAAGAACGGCCCTTTGCCCTACAGCTCGTCGAAATATGCTTCAGACCTGCTTAGCTTAGCCTTGAACCGCCACTACAACAGCCAGGGTATGTTCTCATCAGTGATCTGCCCTGGTCTGGTCATGACTAACCTCACCTATGGCATTCTGCCTTCATTGTTCTGGACTATCATCATGCCAATATTGTTTCTTATAAGGATATTCACCAATTCTTTTACCCTCTCACCATACAATGGAGCGGAGGCTTTG

Function

GO:

id name namespace
GO:0006695 cholesterol biosynthetic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0000253 3-keto sterol reductase activity molecular_function

KEGG:

id description
ko00100 Steroid biosynthesis
ko00140 Steroid hormone biosynthesis
ko04913 Ovarian steroidogenesis

ZFIN:

id description
ZDB-GENE-061013-378 Predicted to enable 3-keto sterol reductase activity. Predicted to be involved in cholesterol biosynthetic process. Predicted to act upstream of or within steroid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human HSD17B7 (hydroxysteroid 17-beta dehydrogenase 7).

Ensembl:

ensembl_id ENSDART00000145693

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065188 lncRNA downstream 86584 34851894 ~ 34860590 (-) True XLOC_032968
TCONS_00064749 lncRNA downstream 128985 34817183 ~ 34818189 (-) True XLOC_032966
TCONS_00065187 lncRNA downstream 295035 34649795 ~ 34652139 (-) True XLOC_032965
TCONS_00065186 lncRNA downstream 769276 34158617 ~ 34177898 (-) True XLOC_032962
TCONS_00065185 lncRNA downstream 962509 33983870 ~ 33984665 (-) True XLOC_032960
TCONS_00064073 lncRNA upstream 82170 35036515 ~ 35039045 (-) False XLOC_032972
TCONS_00065190 lncRNA upstream 130687 35085032 ~ 35090195 (-) True XLOC_032973
TCONS_00064750 lncRNA upstream 794721 35749066 ~ 35749921 (-) True XLOC_032979
TCONS_00064088 lncRNA upstream 956153 35910498 ~ 35914709 (-) False XLOC_032980
TCONS_00064087 lncRNA upstream 956153 35910498 ~ 35914709 (-) False XLOC_032980
TCONS_00064059 mRNA downstream 8428 34931597 ~ 34938746 (-) False XLOC_032969
TCONS_00064060 mRNA downstream 8496 34931600 ~ 34938678 (-) False XLOC_032969
TCONS_00064058 mRNA downstream 86600 34847276 ~ 34860574 (-) False XLOC_032968
TCONS_00064053 mRNA downstream 108761 34823721 ~ 34838413 (-) False XLOC_032967
TCONS_00064054 mRNA downstream 108777 34825754 ~ 34838397 (-) False XLOC_032967
TCONS_00064068 mRNA upstream 5680 34960025 ~ 35032792 (-) True XLOC_032971
TCONS_00064069 mRNA upstream 79112 35033457 ~ 35052188 (-) False XLOC_032972
TCONS_00064071 mRNA upstream 79112 35033457 ~ 35052388 (-) False XLOC_032972
TCONS_00064070 mRNA upstream 79112 35033457 ~ 35052388 (-) False XLOC_032972
TCONS_00064072 mRNA upstream 81849 35036194 ~ 35052145 (-) False XLOC_032972
TCONS_00064062 other downstream 8467 34932623 ~ 34938707 (-) False XLOC_032969
TCONS_00064061 other downstream 8481 34931950 ~ 34938693 (-) False XLOC_032969
TCONS_00064063 other downstream 8481 34932956 ~ 34938693 (-) False XLOC_032969
TCONS_00064064 other downstream 8488 34933586 ~ 34938686 (-) True XLOC_032969
TCONS_00064057 other downstream 108875 34833148 ~ 34838299 (-) True XLOC_032967
TCONS_00064091 other upstream 958276 35912621 ~ 35913507 (-) False XLOC_032980
TCONS_00064094 other upstream 1224000 36178345 ~ 36197764 (-) True XLOC_032982
TCONS_00064097 other upstream 1524848 36479193 ~ 36502330 (-) True XLOC_032985
TCONS_00064104 other upstream 1779364 36733709 ~ 36733826 (-) True XLOC_032989
TCONS_00064105 other upstream 1789789 36744134 ~ 36744251 (-) True XLOC_032990