RNA id: TCONS_00065189


Basic Information

Item Value
RNA id TCONS_00065189
length 595
lncRNA type sense_over
GC content 0.46
exon number 6
gene id XLOC_032970
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 34943351 ~ 34958274 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTCAAGGGTGCAGAGGAGTTCAAGAAGAAGTTTAACAGATTGGACTATCTGTATCTCAATGCTGGAATCATGCCTAATCCCACGGTGGATCACGTAGCCTTTTATCGGGGCCTGTTTTCTAGAAATGCGATTAAAATGTTGACCACGGGGGAGGGTATTCTGACCCAGGAAGATAAGGTCACACCCATTGGTTTGCAGGAGGTGTTTGCTACTAATCTTTTTGGTCATTTCCTTCTGGTGAAAGAACTGGAGCCTTTATTGTGCCAGACAGAGCACAATTCTTTAGTCATCTGGACGTCCTCCAGTAATGCCCAGCGATCCTCCTTTAATCTCGAAGATGTGCAGCATAAGAACGGCCCTTTGCCCTACAGCTCGTCGAAATATGCTTCAGACCTGCTTAGCTTAGCCTTGAACCGCCACTACAACAGCCAGGGTATGTTCTCATCAGTGATCTGCCCTGGTCTGGTCATGACTAACCTCACCTATGGCATTCTGCCTTCATTGTTCTGGACTATCATCATGCCAATATTGTTTCTTATAAGGATATTCACCAATTCTTTTACCCTCTCACCATACAATGGAGCGGAGGCTTTG

Function

GO:

id name namespace
GO:0006695 cholesterol biosynthetic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0000253 3-keto sterol reductase activity molecular_function

KEGG:

id description
ko00100 Steroid biosynthesis
ko00140 Steroid hormone biosynthesis
ko04913 Ovarian steroidogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065188 lncRNA downstream 86584 34851894 ~ 34860590 (-) True XLOC_032968
TCONS_00064749 lncRNA downstream 128985 34817183 ~ 34818189 (-) True XLOC_032966
TCONS_00065187 lncRNA downstream 295035 34649795 ~ 34652139 (-) True XLOC_032965
TCONS_00065186 lncRNA downstream 769276 34158617 ~ 34177898 (-) True XLOC_032962
TCONS_00065185 lncRNA downstream 962509 33983870 ~ 33984665 (-) True XLOC_032960
TCONS_00064073 lncRNA upstream 79039 35036515 ~ 35039045 (-) False XLOC_032972
TCONS_00065190 lncRNA upstream 127556 35085032 ~ 35090195 (-) True XLOC_032973
TCONS_00064750 lncRNA upstream 791590 35749066 ~ 35749921 (-) True XLOC_032979
TCONS_00064088 lncRNA upstream 953022 35910498 ~ 35914709 (-) False XLOC_032980
TCONS_00064087 lncRNA upstream 953022 35910498 ~ 35914709 (-) False XLOC_032980
TCONS_00064059 mRNA downstream 8428 34931597 ~ 34938746 (-) False XLOC_032969
TCONS_00064060 mRNA downstream 8496 34931600 ~ 34938678 (-) False XLOC_032969
TCONS_00064058 mRNA downstream 86600 34847276 ~ 34860574 (-) False XLOC_032968
TCONS_00064053 mRNA downstream 108761 34823721 ~ 34838413 (-) False XLOC_032967
TCONS_00064054 mRNA downstream 108777 34825754 ~ 34838397 (-) False XLOC_032967
TCONS_00064068 mRNA upstream 2549 34960025 ~ 35032792 (-) True XLOC_032971
TCONS_00064069 mRNA upstream 75981 35033457 ~ 35052188 (-) False XLOC_032972
TCONS_00064071 mRNA upstream 75981 35033457 ~ 35052388 (-) False XLOC_032972
TCONS_00064070 mRNA upstream 75981 35033457 ~ 35052388 (-) False XLOC_032972
TCONS_00064072 mRNA upstream 78718 35036194 ~ 35052145 (-) False XLOC_032972
TCONS_00064062 other downstream 8467 34932623 ~ 34938707 (-) False XLOC_032969
TCONS_00064061 other downstream 8481 34931950 ~ 34938693 (-) False XLOC_032969
TCONS_00064063 other downstream 8481 34932956 ~ 34938693 (-) False XLOC_032969
TCONS_00064064 other downstream 8488 34933586 ~ 34938686 (-) True XLOC_032969
TCONS_00064057 other downstream 108875 34833148 ~ 34838299 (-) True XLOC_032967
TCONS_00064091 other upstream 955145 35912621 ~ 35913507 (-) False XLOC_032980
TCONS_00064094 other upstream 1220869 36178345 ~ 36197764 (-) True XLOC_032982
TCONS_00064097 other upstream 1521717 36479193 ~ 36502330 (-) True XLOC_032985
TCONS_00064104 other upstream 1776233 36733709 ~ 36733826 (-) True XLOC_032989
TCONS_00064105 other upstream 1786658 36744134 ~ 36744251 (-) True XLOC_032990

Expression Profile

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