RNA id: TCONS_00006397


Basic Information

Item Value
RNA id TCONS_00006397
length 5284
RNA type mRNA
GC content 0.44
exon number 30
gene id XLOC_003245
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11120532 ~ 11193205 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGTCGCTGCGTTTCGGTGCAGAGACATGTGAAAACCGCCTTCCATTCATCTGCATGAAAAACGAAAACGACACTGAGAGCACAGTCAGGGATGTGTATAAACCTACGAATTGTAGTGATGGTTGGATTGGGTGGAAAGGATACTGTTATAAACTTCACAGTGCAGAGTCCAAAATGTCTCAACATGAAGCTCTGGATTTGTGTAAAATGGATGATGCTAAGCTTGCAAGTTTACACAGTTTGGATGATATAGAAATGCTGCATACAAACTTTCATGGAGATCTGAAGACAGAGGTGTGGATTGGTCTTTGGGGTAATGGAAGCACCTCAGTCTTTGAATGGGTCGATAAAGCTCCAGTCTCTTTCACATACTGGGCCAGAGCTCAACCTCCACCACTGCTACCAAATACCATCAACTGTGTGTACTACTCAGGAGAGCATCATACGTGGTCTGTTTCTGACTGTGATAAGCCACGGGCTTATATGTGTATGAGGAACTCGCAGAATGTGAATGAAAGTGCAGCAGAGGAAGGCTGTCCTCCAGATGGGAATTGGAAGAGACATGGTGATGCTTGCTATACAGTGGACACTAATCTAGTGTTCTATAAAAACAGCTGCCACATCTCCATTAATAACAGATTTGAACAGGCCTTCATTAACAGTCTCCTGAAAGAGCATATCAGCACCGAGGTGTTGTATTTCTGGACCGGGCTACAGGACTCTAAAGGGTCCGGGGAGTACCAGTGGTTCAGTCAGGATGAAACCGCAGATCAAGTCACTTACACCAACTGGAAATGGCTTGAACCAGcttctgCTGGTGGATGTGTGGTGATGTCTTCTGGCAATCCTTTGGGGCGATGGGCTGTAAAGAACTGCACTTCGTTCAAGGCTGGAAATATCTGTAAGAAACCCATAAAATCGAAGGTCCAACCCATCCCAGACCCTTTTGTGCCAAACCCCAATGCTTCCTGCGCGCCTGGATGGGTCTCAAGAGAAGGCCTGAACTACTGTTACAAGGTGTTTCACGAGGAGCGTTTGACCCGGAAGCGCTCATGGGAAGAGGCAGAGCGTTTCTGTGAGGCATTAGGTGGTCACCTGCCTAGTTTTACTGAGGTTAAAGACATGGAAGCCCTACATTTAATCTTGAGAAACTCTGTCAGTAATAACCGTTTTTTCTGGGTGGGACTAAATCGGCGAAATCCAAATACCAACAATAACTGGGAGTGGAGTGACGGGCGTCCGGTCTCCATGATGATCTTTCCTGAGGAGTTTAAAGAAGATGATGATTATAACAGGGACTGCATTGCGTTTAAGACTATGAAACCAACCTACAAGCCGTTTCTCTTCCTTCTTATCCACAAAGCATCTCCACGGCCTTTTTATCCCAGCACCTTTCATTGCGATGCCAAACTGGAATGGGTGTGTCAGATACCACGAGGTCAAACTCCAAAAACCCCAGAATGGTACAACCCAGATGGGCACCATAACACATCAGCTTTTATAGATGGCCAGGAGTTTTGGTTTGTGACGGAGCCGAAGTTGTCTTATGAGGAGGCTGTGTTGTACtgcagcagcaacaacagcaaACTGGCCTCACCGGACACCTTAAAAGCAGCCCTCCATCTTCAGGAACAGATATCTGAGCATTCAGGACCACATTTTATAAGGTGGTGGGCAGACCTTCGTTACCCTGGTCCTCATGTTCCCTTTATGTTCAGCCACATGCGTTATTATGAGTCATCATTCCGTGGGCCGTGTCCTTCTATCACTCCTGTCTCTCTAGATCCAGGTTACAGCCGAATATGTAATGAAAAACAGCCATTTGTGTGCGAAACCCTGAATGTCACTTCTGTGGAGAAAGGAACCCCAGAACCACATCCAGTCGGCACCCAATGTGGAGGCAATACCTATCACTTCAAAAACAAGTGCTACCAGATTTTATCAGAATCTTATTTTCAAAACTTTAAAGAAGCGAATGAGTTTTGCCAGCAACTGAAAGGCTCATTGCTTACTATATCCGACCAAGTCGAACAGGATTTCATCACTACATTGTTACCAAAGTTGCCTAATCAGCCTCGTAAAGTCTGGATTGGCCTGAAATTCAAGCGTCCTGACACTCAGTGGGTGGACAACTCGCCGATTGAATATCTCAACTTCAATCCGCTCCTGCATGGCCAGTTTCGATCCATTTTCATCAATCCTTTTGAACATGACCAGCTGGAACTGTGTGCCTACATGTACAATGATGACCATTCAGACATGATGGGCACCTGGGACTACACCTCCTGCACCGACCGCCAGTTTAACAGCATCTGCCAGTATTTTGCAGATAAACTTGAGGAGCCCAAGCCTGAAAATAACTTCACGGTtcaaaatcacacatttaaaGTGGTACAGCAGGACAATTTAACATGGGCAGATGCTCTTCAGTTGTGCCGGAGCTTCAATTTGGAATTAGCCAGTGTCCCGAATGCATATGTCCAGGCAGTGCTCACAACACAGGTTTCTCGAAGAGGAAAGCCTCTTTGGATCGGACTCTTTAGCGAAGACgacGGGGAGCACTACAAGTGGACGGACAACAGCCACTCCGAGTTTAATCGCTGGACTTCTGAAGCCACCGAAGGCTCCTGTGTGTTTCTGGACACTGATGGCTTCTGGAAGGCCACAGACTGTGAGGAAGAGCTTTCTGGAGCGATCTGCCACATCCCATCCATTGATAAGACCATCACACCTGACAAACCATGCCATCATAAAAGCAATGGCCAGAGCTGGATTCGTTTTAAGAAGAACTGCTATACATTACTGCTGATGTCCTCCAGATGGGGCAACGGCGACATCAGTGACCATAAGATCTGCAGCACTCTCGACAAGCATGGAGAAATCTTGACCATTCGTGATGAAGCTGAGAATAACTTCATTATGCAGCAGTTGAAGCCATTCAAAGACTTGGCAATGTTTGTTTGGCTGGGAATGAGCACAAACAAGACAGATGAGCAGCTGAAATGGCTGGATGGCACTTATGTGCAGTTCTCCAACTGGAAATATGGTGAAAGACCGAACATGACAAACTCCTTCATTGCCGGCCTCAACTTGAATGGGGAATGGGAAACCATTTCAAAACAACATCTCGATGTTTTTAAACAGCAAAGTATTGTGGTGTGCAAGATTGAAAACGATACCAAAGATGAATTCCTGAAGGGTGTGGTCGACATTAATACTCCACAAGACATAAGTTATCGTCGAGTGGCTAAGAAATTGAACTGGTATCAGGCACTTCAAGAGTGTGGCAGTAATGGCGGCCATCTTGCCAGCATTACTGACAAAACCACTAATGAAAACATGGCACTGATTGCCAAAAGGGATGGCTTTTCACTGTGGATCGGTCTCTCCAAACAAGATGTAAGCAGATGGCCATTTGAGTGGTCAGATGGGACCGCTGTGAAATTCAAAACAGATGGATTTGAGGATGACGGGGATGATTCAGAGGAAAAGTGTGTGTTTATTGACTCCACAGGCAACTGGTCAGCCGTCAACTGCCATGCAACACAACAAGGGGCCATCTGTTATAACCACCTGAATGAGGgaacttCTGATCGCTTTTCTAAATCCAGCAGCAGTTGTCCCAAGAGTGATGGTCAGTCCTCGTGGGTCCTGTTTAAAGATCACTGTTATAATTTCAATACATACAACTTCTCTGTCTTCACCATGGATGATGCTAAGAATGTGTGTCAGACTCTGGATTCTTCATCCAATCTGTTAACCATCAAGAGTAAAGAGGAGAATGATTTTGTTTCTGATTATATCAATAAAAACCCTTCCATCACCAGTCGAGTGTGGCTGGCGCTCATCGTTGACGCCaaagGTAATCCCACGGGCTGGCAGGATGGCAGTGAACTTGACTTTTCCAGCTGGGATTTGTCAAATTCAAAGGCTCAGCATTCTCTTGACGGCACACAGTTGTGTGCAGTCATGCTCTCCAGCAGCGGCTCCTGGACTCAAGCCTCCTGCTCCAACAGCCGAAGCAGAGTCGTCTGCAAAGCCCCTGCCCaTCCAGGAACCCCCGTGGCTCTGATCTTCTTCATCATCATAGTCCTCATCCTCGCTGCTGCTGTTGGCTTCATACTGTACCAGAAAAACAAGCACCGCTTCCATTCCCCTGTACGTTACCAGCGCAACTTCGATGACGCAGACAGTACAAGCATGATCAATGATGCAGATTAACTTAACCAAATGAAGCAGTAGCTGTATTAATGTGCCTTTACTATAAACACTCCTCTACGACGTCAACACAAACTCCCGCCTCAGTGCTGCAAAACATACTTATTTATTGATATTCAGCAAACATCTTTACTGTCTGGGTAAATTTAAAAAGGAGTGACATTTATTAGAgggtttttttaaattgttgttgtttaaattaaaatgtttgaaaatctTGTGTATATTTTAATGGGAGGAATGCAGGTACTTACTGTACTAAATCTGGTTCTCTTGAAGTGATCAGGGTCAGGGTTTTTCACTCCTGTTGAGCAGCACTGAAATTGAACTGAAAGCttttaagaatgtacattttagaTTTCTAATTTCCTTTTTGAAGATGTGATTTTAACAGAGCAAAACTCTTATTTTATGAATTCAAAACTAcgttctgtgcttttgtttttcatttgatttctGAATGCCACTCTGCAATGTTCATAGATTTGTTTAGATATCAGGCAGTAGAACATTCCTTTCAAACTCGCTATAATGGTGTTTTTTCCCACACTGTATTTTCCTGTGATGGTGTATTACAGCtttgtttgcatttattacagtaatattGAAGTGCTGTACAACATCTTATTGCAGCATGCTAAAGCAGTGCACCGAGTGCTGAATGATAACATGTACAGTCACTAAGGATATCTATGCACTCTTATGCTTAATTCACTCAAACTACTGAGATCTGATGCACTTTAACTAGCTGTTTGAAACTAACTTCAAGCAGAAATTACAAATTAGTTTAGTGAAGGGTTTAGTACATTCTTTGTAAATATttgtgttgttgctgtttttgattgcttgtttgttgtattttttatttttttcaaactaaGCCAAAGATGCTTTGGGAAGTGATGGTGATATACTGTATTGCAAACCCACAAATCTCCACTCAAGACGATGATGCTTTTGCCAAGAATTTTTTGTGATCTTTGTTTTTGATTTGATCACATATCCGCTCTTCCTCTGTTTTGACCACCGCAGAAGATGCTCAATAAATACATTGTATGTGTTCAAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG:

id description
ko04054 Pattern recognition receptors
ko04090 CD molecules
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-050309-166 Predicted to enable signaling receptor activity. Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Is expressed in heart and macrophage. Orthologous to several human genes including LY75-CD302 (LY75-CD302 readthrough).

Ensembl:

ensembl_id ENSDART00000148030

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008390 lncRNA upstream 86422 11065500 ~ 11065792 (+) True XLOC_003244
TCONS_00008552 lncRNA upstream 479206 10669135 ~ 10673008 (+) False XLOC_003241
TCONS_00008553 lncRNA upstream 479206 10669452 ~ 10673008 (+) True XLOC_003241
TCONS_00006385 lncRNA upstream 614811 10535456 ~ 10537403 (+) True XLOC_003239
TCONS_00008551 lncRNA upstream 1549144 9601745 ~ 9603070 (+) True XLOC_003237
TCONS_00006406 lncRNA downstream 46393 11239448 ~ 11240944 (+) True XLOC_003247
TCONS_00006410 lncRNA downstream 74851 11267906 ~ 11272314 (+) False XLOC_003248
TCONS_00006420 lncRNA downstream 160404 11353459 ~ 11380887 (+) True XLOC_003252
TCONS_00008391 lncRNA downstream 166366 11359421 ~ 11359715 (+) True XLOC_003253
TCONS_00006441 lncRNA downstream 310959 11504014 ~ 11513412 (+) False XLOC_003268
TCONS_00006394 mRNA upstream 42251 11030908 ~ 11109963 (+) False XLOC_003244
TCONS_00006392 mRNA upstream 77109 11021396 ~ 11075105 (+) False XLOC_003244
TCONS_00006393 mRNA upstream 112736 11021735 ~ 11039478 (+) False XLOC_003244
TCONS_00006391 mRNA upstream 132885 10984293 ~ 11019329 (+) True XLOC_003243
TCONS_00006390 mRNA upstream 163665 10975481 ~ 10988549 (+) False XLOC_003243
TCONS_00006400 mRNA downstream 7495 11200550 ~ 11262062 (+) False XLOC_003247
TCONS_00006399 mRNA downstream 7495 11200550 ~ 11262062 (+) False XLOC_003247
TCONS_00006402 mRNA downstream 8041 11201096 ~ 11260870 (+) False XLOC_003247
TCONS_00006401 mRNA downstream 8041 11201096 ~ 11260870 (+) False XLOC_003247
TCONS_00006403 mRNA downstream 8135 11201190 ~ 11260855 (+) False XLOC_003247
TCONS_00006384 other upstream 1253584 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006353 other upstream 3877836 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 4001308 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 4001574 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 4001848 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006409 other downstream 74835 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 78879 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 152748 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 179831 11372886 ~ 11373182 (+) True XLOC_003255
TCONS_00006426 other downstream 193307 11386362 ~ 11386658 (+) True XLOC_003257

Expression Profile

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