RNA id: TCONS_00064073


Basic Information

Item Value
RNA id TCONS_00064073
length 655
lncRNA type retained_intron
GC content 0.36
exon number 2
gene id XLOC_032972
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 35033457 ~ 35052388 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCTGTTTCTAATGGGTAAATCATATGTATATTATGATTATTGAAGAAAATCCTTTGTGAATCTAACCTTTTCAAGATTTTAGTAATGTTGTGTAAAATCTTTTCATtgtttaatgtatataaaatgatTAATGCTTGGTCTGCATGGCCATTCAAACACAATTCTAACCTTTTTTGCCATCACAGTCTGAAGGATGGAACAGATCTGCCAATCAAATGTGAGATCTCTCCTCTTGTGTCCTATGGTGGTGAGGGTTTGGAGCATCTTGTGAATGAAAAAGTCTTCCAGCCGACTCTGATCATCAATGAGAGCGGCGTCCACGAGCTTGTGAAGAATGGCCTGTGAAGCTGGAGCTACTGCACTTGAAACCAAAAAAATGAAGACTCTTGATCTCTTTATCATCTCCATTTTTCAACTAGGGTGAAGGAAAGCATGAAATTCTAGTGCAATAAAATGAAGGAAGGAGGGGGCCAGAAGGCTAAACACAATCAAACCGTTTTAtgatcaaactatttattttgtgAAGACTTATTTTTATATCAATATCTAGTGCTTTTTTTTCTACAACCGGTACTTGGGTATTAATTTATGAATAGATGTACAGCATCGCATCAAATCAAACTCAATGATATGAACTGTAGATAGCTTTAATGG

Function

GO:

id name namespace
GO:0006048 UDP-N-acetylglucosamine biosynthetic process biological_process
GO:0070569 uridylyltransferase activity molecular_function
GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity molecular_function

KEGG:

id description
ko00520 Amino sugar and nucleotide sugar metabolism

ZFIN:

id description
ZDB-GENE-030131-1233 Predicted to enable UDP-N-acetylglucosamine diphosphorylase activity. Predicted to be involved in UDP-N-acetylglucosamine biosynthetic process. Is expressed in several structures, including EVL; ectoderm; hatching gland; pectoral fin; and polster. Orthologous to human UAP1 (UDP-N-acetylglucosamine pyrophosphorylase 1).

Ensembl:

ensembl_id ENSDART00000145997

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065189 lncRNA downstream 79039 34947174 ~ 34957476 (-) False XLOC_032970
TCONS_00064067 lncRNA downstream 79039 34951577 ~ 34957476 (-) True XLOC_032970
TCONS_00064066 lncRNA downstream 82170 34947174 ~ 34954345 (-) False XLOC_032970
TCONS_00065188 lncRNA downstream 175925 34851894 ~ 34860590 (-) True XLOC_032968
TCONS_00064749 lncRNA downstream 218326 34817183 ~ 34818189 (-) True XLOC_032966
TCONS_00065190 lncRNA upstream 45987 35085032 ~ 35090195 (-) True XLOC_032973
TCONS_00064750 lncRNA upstream 710021 35749066 ~ 35749921 (-) True XLOC_032979
TCONS_00064088 lncRNA upstream 871453 35910498 ~ 35914709 (-) False XLOC_032980
TCONS_00064087 lncRNA upstream 871453 35910498 ~ 35914709 (-) False XLOC_032980
TCONS_00064090 lncRNA upstream 871453 35910498 ~ 35914713 (-) False XLOC_032980
TCONS_00064068 mRNA downstream 3723 34960025 ~ 35032792 (-) True XLOC_032971
TCONS_00064065 mRNA downstream 78241 34943351 ~ 34958274 (-) False XLOC_032970
TCONS_00064059 mRNA downstream 97769 34931597 ~ 34938746 (-) False XLOC_032969
TCONS_00064060 mRNA downstream 97837 34931600 ~ 34938678 (-) False XLOC_032969
TCONS_00064058 mRNA downstream 175941 34847276 ~ 34860574 (-) False XLOC_032968
TCONS_00064075 mRNA upstream 7684 35046729 ~ 35051671 (-) True XLOC_032972
TCONS_00064076 mRNA upstream 60852 35099897 ~ 35106425 (-) False XLOC_032974
TCONS_00064077 mRNA upstream 67070 35106115 ~ 35309661 (-) False XLOC_032974
TCONS_00064078 mRNA upstream 97405 35136450 ~ 35310224 (-) True XLOC_032974
TCONS_00064079 mRNA upstream 348322 35387367 ~ 35401282 (-) False XLOC_032975
TCONS_00064062 other downstream 97808 34932623 ~ 34938707 (-) False XLOC_032969
TCONS_00064061 other downstream 97822 34931950 ~ 34938693 (-) False XLOC_032969
TCONS_00064063 other downstream 97822 34932956 ~ 34938693 (-) False XLOC_032969
TCONS_00064064 other downstream 97829 34933586 ~ 34938686 (-) True XLOC_032969
TCONS_00064057 other downstream 198216 34833148 ~ 34838299 (-) True XLOC_032967
TCONS_00064091 other upstream 873576 35912621 ~ 35913507 (-) False XLOC_032980
TCONS_00064094 other upstream 1139300 36178345 ~ 36197764 (-) True XLOC_032982
TCONS_00064097 other upstream 1440148 36479193 ~ 36502330 (-) True XLOC_032985
TCONS_00064104 other upstream 1694664 36733709 ~ 36733826 (-) True XLOC_032989
TCONS_00064105 other upstream 1705089 36744134 ~ 36744251 (-) True XLOC_032990

Expression Profile

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