RNA id: TCONS_00064076


Basic Information

Item Value
RNA id TCONS_00064076
length 3345
RNA type mRNA
GC content 0.38
exon number 2
gene id XLOC_032974
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 35099897 ~ 35310224 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGGAGAAGAAGCCCAGCGTAGAACTGAATAGCAAGCCCACATCTGCGGTGATGGATGAGAGAAATTCAGAGGATGTGGATCAGTCGCAGATGCTTCTCTCAGTTCCAGATCTCATTCACAAAGACAATCTGGACCCAAAGAAACTGGCCAATTCAGAAACCAGAATGGCTTCCACTCCGTGTCCAGGGAAAGGCGGCTGCCGGATCAGCGTCACTGAAGGGGAATTAATGGAGAATGGCACTGTGGATTATCGAACCCTCAACCTGGACAACGAAGAACCACATCCTGACCTGCTGTCATTTGAATAAGACAGTCCGACTCCCATGACACTCTCTCAGACCTGCTCTTTATCCAACACAATGGCTCCTCTGGAAAGATTTTGGGATGTTCGGTTGCATTTAATGGCGCTACTTACGCTcccattatttatatatttccatGCTGCATTTGATGTACTGAGATGTCATTTGGAACTTATACAGCCCCTCATATTAAGACTTGTATAGCTCAATATGATGTAAATAATGTCTTAAATGTGTATTAGAAtacctttgatttacatttactttaaaacttCACATTCATTCTGGATTATGGGAGCTGCCGTTACAATGTGCAGTGCTTGATGGTAAACAGTTGCATCTGTATAATGCTGCATCGAGTGGCTTTTGGCTGTAAGTTTCACTCAAAGGGCAACAAGAGCTGAAAATGTAAGTCTTAAATACCAttgatttttttccccacatGGAGTCTAAACACCCCTAGATATTGAGTGAAATCTGCACTGTGAAACTGCAGAGACAACAAATGCTAACCGCTAAACAACTTGTCAACATCTGTGTGTTGCTGCATCAGCCATAACTGGAGAAAACTCTACACTAAAAAGGGCTGTATGTGAGTTTTTCAATCTTTTAAATCAtagaaataccataatatgtttgcagatacttAAGAAACATGCTATGCTAACATGCTTGTTTACCTGGTAAACagtgctaaagtcagttattctcctttGTAAGTGtcagaacgtctgtctttgttttggtctgtgtaCTGTATCTTCGCCCACTACCACTTTACCCAGTTATATTTCAGCAACTGCATTTCATTCATGAAGGTTTTCTCAATATACTGTACAGCTGAAAACGGAGGACAGCAGCCTCCAAAATGAAATGCAGATTCATAGTTGTAAAAATCCACATGAGGTGTTTTTTACTTTGTTGCATTGttgcaaatgtaaacattagctgattatcttaaagcaggggtgtccaaactcagtcctggagggccggtgtcctggagagtctATCTCcaacctgcttcaacacacctgccaggaagcttCTAGTATATCTAATAAGAGCTTGATCATCTGCTTTAGGTGTGtttggttggagctaaactctcaagGACACTggaaaatgatcaaaacattttttttagcaagatgctaatggtctaatccaattcaatggcTTATGCTAACCTAAGCTAAAacctggagatcggctgaatggagtaaaaaatgtaaaactcagCTGTTTAAATTTAGAAGTGTTGTGAGATGAGTCAAAATAATACATATTGGAGTGTTTCTTTGAGCCATACAAGTCTTAATAGCTTGGGTTGCTTTTAAAGGTGAAGTATGTAGATTCTACACTAATAGTGGCAAAAATAAAGCCTATTTTCATCATTTCCAAACACCTATTACACTCACCTTTTGCAAAAGACATACATTTGTAAGATTATTCttgtgtgtttaatattttaaagttttttttaggcTAACGTTGCAAAAGTCTCGATTAAAGTCCCcaggaaatcaaaactaaccatgttGTTTTTGTTAGCTCATATTGTCAGTCTTGTGGTGAACAGATTATCTGTgcatgtctttttaaaaaaaaaggtttgcccttctaatctttcgttgattgattttttttttcagttaaattgtcagattacgtatatcttaggaattgaacatggctaacatgtttaacagacaacagaaatggtgagcaggaggtgtctgttaggtttaATTACTCTCCTCAAACCCTTTTCtctatctttctgaatgaaatgcctactttacatcATCCAATCAGCTCtcaatagaaaaaaacaagccacacccactgttttcttatttaatattttgtttctctaggaactgcgtcacaatatgaaaaaaaaattatagacgCTGCTCCCAGTTCATGGGGACTAGCAGCCCATTTACACAGGCTGTCTGCGTCAACGTTTTTCATTCACTTTGAGTGGGTGACGTCAAGTGTTGCTGAACTGAATTGTGGGATCCGTCAGCGccgctcgctgcagaagttggggacttttttttaacttttcaagtgccaatggaagcatcagccaatcagatggctcTATGCAAATACCCCAACTCAGGCAATAGCGGATTGCAGACTTATTTCATTGGCTGCTTTGACGATTGCATCAGACCCAATTTCAGACACACTCTCCATCAAGCGTTTACGGTAAAGCCCAGTGTGAATTTGGCGTAAAACCAAAAAATTCCAAATtgatccatttttttttaaatcacagattGTCTTAATCCTTGTTTTACTGTGATGGCTCTTCTACTTAAGGTagacttttacatttttcaactTCTGTtagaaaatctttttattttgactCAACCCACCTGCTGCTGGAGCTACACCCCAAACTTTTGCTATTGGTTGAGCTGCAAGTGATTGACGGATTTTACATACTTCACCTTTAAAGCTCCAGGTCTTGGGATACAATAGTCAACATGCATTGTTAAAGATGGCCGAATGAAAGTTTGAGTTTGTCTTGTGTGTATTACCATTGAAACACTATTACTATTTATGCGCTTTAAGAATGTCTTTTTGTACCATATTTTAGTTACACTACTACTGTAATGTCACGTGTGCAATGATACGTAACTCATAATAGTGTCAACACTAAAATGAGAGTACAAAGTGGAGCAAGAGCTGAATTATTATGGACCACTGATACTATATTACTGCATGTGAGTCTGATATGAAGTATTTCACGCCATTCTGTGTGAATCAGTGGAAGAAACTGATATTTATCTTTAGCTTTTTAATTGAGATGATTTGTGATGGAGAACTTGACGGGAATGTTGTTGGTAATGTTTCTTTGTGATGCTTTATGTGTTTCATTTCAGTCAAAGTGGTCTTATTGTCACATTTGTTTGGATGAAGAAAATCAATTGAAGAAAAAAAGCATGTTATATGAAGGTTTTATGAGTGCACTGAAATGTATTTGGAGAAGTTGGCTATATTAAAGTGATTTCACATTA

Function

GO:

id name namespace
GO:0050998 nitric-oxide synthase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081024-1 Predicted to enable nitric-oxide synthase binding activity. Is expressed in mesoderm; neural tube; notochord; and organism subdivision. Human ortholog(s) of this gene implicated in nephrotic syndrome type 22. Orthologous to human NOS1AP (nitric oxide synthase 1 adaptor protein).

Ensembl:

ensembl_id ENSDART00000165139

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065190 lncRNA downstream 9702 35085032 ~ 35090195 (-) True XLOC_032973
TCONS_00064073 lncRNA downstream 60852 35036515 ~ 35039045 (-) False XLOC_032972
TCONS_00065189 lncRNA downstream 142421 34947174 ~ 34957476 (-) False XLOC_032970
TCONS_00064067 lncRNA downstream 142421 34951577 ~ 34957476 (-) True XLOC_032970
TCONS_00064066 lncRNA downstream 145552 34947174 ~ 34954345 (-) False XLOC_032970
TCONS_00064750 lncRNA upstream 642641 35749066 ~ 35749921 (-) True XLOC_032979
TCONS_00064088 lncRNA upstream 804073 35910498 ~ 35914709 (-) False XLOC_032980
TCONS_00064087 lncRNA upstream 804073 35910498 ~ 35914709 (-) False XLOC_032980
TCONS_00064090 lncRNA upstream 804073 35910498 ~ 35914713 (-) False XLOC_032980
TCONS_00064089 lncRNA upstream 805100 35911525 ~ 35914410 (-) False XLOC_032980
TCONS_00064071 mRNA downstream 47509 35033457 ~ 35052388 (-) False XLOC_032972
TCONS_00064070 mRNA downstream 47509 35033457 ~ 35052388 (-) False XLOC_032972
TCONS_00064069 mRNA downstream 47709 35033457 ~ 35052188 (-) False XLOC_032972
TCONS_00064072 mRNA downstream 47752 35036194 ~ 35052145 (-) False XLOC_032972
TCONS_00064075 mRNA downstream 48226 35046729 ~ 35051671 (-) True XLOC_032972
TCONS_00064078 mRNA upstream 30025 35136450 ~ 35310224 (-) True XLOC_032974
TCONS_00064079 mRNA upstream 280942 35387367 ~ 35401282 (-) False XLOC_032975
TCONS_00064080 mRNA upstream 288625 35395050 ~ 35439406 (-) True XLOC_032975
TCONS_00064081 mRNA upstream 337005 35443430 ~ 35446110 (-) True XLOC_032976
TCONS_00064082 mRNA upstream 352944 35459369 ~ 35488180 (-) False XLOC_032977
TCONS_00064062 other downstream 161190 34932623 ~ 34938707 (-) False XLOC_032969
TCONS_00064061 other downstream 161204 34931950 ~ 34938693 (-) False XLOC_032969
TCONS_00064063 other downstream 161204 34932956 ~ 34938693 (-) False XLOC_032969
TCONS_00064064 other downstream 161211 34933586 ~ 34938686 (-) True XLOC_032969
TCONS_00064057 other downstream 261598 34833148 ~ 34838299 (-) True XLOC_032967
TCONS_00064091 other upstream 806196 35912621 ~ 35913507 (-) False XLOC_032980
TCONS_00064094 other upstream 1071920 36178345 ~ 36197764 (-) True XLOC_032982
TCONS_00064097 other upstream 1372768 36479193 ~ 36502330 (-) True XLOC_032985
TCONS_00064104 other upstream 1627284 36733709 ~ 36733826 (-) True XLOC_032989
TCONS_00064105 other upstream 1637709 36744134 ~ 36744251 (-) True XLOC_032990

Expression Profile

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