RNA id: TCONS_00064077


Basic Information

Item Value
RNA id TCONS_00064077
length 2038
RNA type mRNA
GC content 0.52
exon number 12
gene id XLOC_032974
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 35099897 ~ 35310224 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCCTGCAAAAACAAAGTACAATTTAGTCGATGATGGACACGATTTACGGATTCCTTTACATAACGAGGAAGCCTTCCAGCATGGCATTAATTTTGAAGCAAAGTATATTGGTAGTCTGGATGTGGCTCGACCGAATAGCCGTGTGGAGATTGTTGCGGCCATGAGGCGAATAAGGTATGAATTTAAGGTGAAGAATATCAAAAAGAAGAAAGTCAACATCATTGTGTCTGTGGATGGAGTAAAAGTAGCCCTGCGGAAAAAGAAAAAGAAAAAAGAATGGACCTGGGATGAAAGCAAGATGATGGTGATGCAAGACCCAATATACAGgaTATTCTATGTATCGCATGACTCCCAAGATTTGAAGATCTTCAGTTACATAGCGAGAGATGGCCAGAGCAATGTGTTTCGGTGCAACGTCTTCAAATCGAAGAAAAAGAGCCAAGCCATGCGGATAGTGCGGACGGTGGGTCAAGCCTTTGAGGTCTGTCATAAACTTAGCCTTCAGCACACACAGCAAAACGCAGACGGCCAAGAAGACGGCGATGCTGACAAGACATGCACAGACTCTGGAGTAGCAGGGCGGGAGCTCACGGGGGCCGAAAAGCCTGCTGCAGATGAGACTGACATTGATGCAGAGGAGCTTCCCCTCCCCGACAGCACAATGGACGAGTTCAGCCGCGGAGTCACTGACCTGGATGCGGCCAAGAAAGACGAAGACGTCAGCAAGGACAAAAAGCCCTCGGAGGAGCCCGTGATCCTGCTGGCATCCCCTAAATTGCTACTACCGTCAGGCAGTGATCTCCCGTCCAGCACACCGCTGTCTGTGCACCACCAGCTCCAGCTTCTCCAGCAGCAGCTcacccagcagcagcagcagacacAGGTGGCCGTGGCCCAGGTTCATCTGCTGAAGGATCAACTCTCTGCTGAAGCGGCAGCGAGGATTGAAGCCCAGGCTCGAGTTCACCAGCTGCTGTTGCAGAATAAAGATCTCCTCCAGCACATTTCCCTGCTGGTCAAACAGATCcaggagctggagctcaagctgGCTGGACAAGGCTCTATGGGCTCTCAGGACAGTCTCCTGGAGATCACCTTTCGTGCCAACGTGCCCCCAGTCTTATGTGACCCCAGCACCCCTCGACCAGAGGACTCCATCCTGCCTCCGCTGAACGATGGGACACAGCTCTCCCTGCCGCTCTGCAGTCCTATAGTGGACCAAAGCATGTTTGAGAACTGCAACGCTGCAGATCAGCCGAAGAGTTTTCGTCCATCAGACTCTTCAGCTTTGTCTGGATCAAAGACAGGAGGCAGTCAACACCTCAAAAATGCCTTCAACTTGGGCAAAGCCATGGGTGCGAAGGTGAACGACCTTCTCCGCCGGAAAGATCCCAGCAGCCTCGGAGACATTGGGGTGACGGAGGTGAATAAGAACGTGGAGCCGGTGTGGGCCAGCCTGGTTGACATGAGCCACGGCACAGCCAGAAACAGTCACGTTTCCCTGGACTCTTTCCCTCGTCTGGATCCTCCTCCACCCACTGGCAAGAAGCGTCTTCCACGTGCCCTGAAGACCACCCAGGACATGATGATCTCCTCCGACCCTGTCGTGGCCTCCCCAGAATCCTCCTTCGTCTCTTCGCCTGACAAAACCTCCAAAGAGAAAGCCGAGTTCCAGCCTGAAGAGTCCAACATCGAGAAACCTCCAGAAGCAGACGTCGACAGTCAGATGGAGAAGAAGCCCAGCGTAGAACTGAATAGCAAGCCCACATCTGCGGTGATGGATGAGAGAAATTCAGAGGATGTGGATCAGTCGCAGATGCTTCTCTCAGTTCCAGATCTCATTCACAAAGACAATCTGGACCCAAAGAAACTGGCCAATTCAGAAACCAGAATGGCTTCCACTCCGTGTCCAGGGAAAGGCGGCTGCCGGATCAGCGTCACTGAAGGGGAATTAATGGAGAATGGCACTGTGGATTATCGAACCCTCAACCTGGACAACGAAGAACCACATCCTGACCTGCTGTCATTTGAATAAG

Function

GO:

id name namespace
GO:0050998 nitric-oxide synthase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081024-1 Predicted to enable nitric-oxide synthase binding activity. Is expressed in mesoderm; neural tube; notochord; and organism subdivision. Human ortholog(s) of this gene implicated in nephrotic syndrome type 22. Orthologous to human NOS1AP (nitric oxide synthase 1 adaptor protein).

Ensembl:

ensembl_id ENSDART00000114960

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065190 lncRNA downstream 15920 35085032 ~ 35090195 (-) True XLOC_032973
TCONS_00064073 lncRNA downstream 67070 35036515 ~ 35039045 (-) False XLOC_032972
TCONS_00065189 lncRNA downstream 148639 34947174 ~ 34957476 (-) False XLOC_032970
TCONS_00064067 lncRNA downstream 148639 34951577 ~ 34957476 (-) True XLOC_032970
TCONS_00064066 lncRNA downstream 151770 34947174 ~ 34954345 (-) False XLOC_032970
TCONS_00064750 lncRNA upstream 439405 35749066 ~ 35749921 (-) True XLOC_032979
TCONS_00064088 lncRNA upstream 600837 35910498 ~ 35914709 (-) False XLOC_032980
TCONS_00064087 lncRNA upstream 600837 35910498 ~ 35914709 (-) False XLOC_032980
TCONS_00064090 lncRNA upstream 600837 35910498 ~ 35914713 (-) False XLOC_032980
TCONS_00064089 lncRNA upstream 601864 35911525 ~ 35914410 (-) False XLOC_032980
TCONS_00064071 mRNA downstream 53727 35033457 ~ 35052388 (-) False XLOC_032972
TCONS_00064070 mRNA downstream 53727 35033457 ~ 35052388 (-) False XLOC_032972
TCONS_00064069 mRNA downstream 53927 35033457 ~ 35052188 (-) False XLOC_032972
TCONS_00064072 mRNA downstream 53970 35036194 ~ 35052145 (-) False XLOC_032972
TCONS_00064075 mRNA downstream 54444 35046729 ~ 35051671 (-) True XLOC_032972
TCONS_00064079 mRNA upstream 77706 35387367 ~ 35401282 (-) False XLOC_032975
TCONS_00064080 mRNA upstream 85389 35395050 ~ 35439406 (-) True XLOC_032975
TCONS_00064081 mRNA upstream 133769 35443430 ~ 35446110 (-) True XLOC_032976
TCONS_00064082 mRNA upstream 149708 35459369 ~ 35488180 (-) False XLOC_032977
TCONS_00064083 mRNA upstream 151970 35461631 ~ 35487413 (-) False XLOC_032977
TCONS_00064062 other downstream 167408 34932623 ~ 34938707 (-) False XLOC_032969
TCONS_00064061 other downstream 167422 34931950 ~ 34938693 (-) False XLOC_032969
TCONS_00064063 other downstream 167422 34932956 ~ 34938693 (-) False XLOC_032969
TCONS_00064064 other downstream 167429 34933586 ~ 34938686 (-) True XLOC_032969
TCONS_00064057 other downstream 267816 34833148 ~ 34838299 (-) True XLOC_032967
TCONS_00064091 other upstream 602960 35912621 ~ 35913507 (-) False XLOC_032980
TCONS_00064094 other upstream 868684 36178345 ~ 36197764 (-) True XLOC_032982
TCONS_00064097 other upstream 1169532 36479193 ~ 36502330 (-) True XLOC_032985
TCONS_00064104 other upstream 1424048 36733709 ~ 36733826 (-) True XLOC_032989
TCONS_00064105 other upstream 1434473 36744134 ~ 36744251 (-) True XLOC_032990

Expression Profile

Expression of TCONS_00064077 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.
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Expression of TCONS_00064077 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_06795551_06907442.mRNA True 2076 mRNA 0.52 12 CI01000340 6795551 ~ 6907442 (-)