RNA id: TCONS_00064083


Basic Information

Item Value
RNA id TCONS_00064083
length 1467
RNA type mRNA
GC content 0.39
exon number 6
gene id XLOC_032977
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 35459369 ~ 35488180 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCACGCTTTCACACTGATGAACACGCTGTGTGATGATTGCTACATGTGGGCAACAGTAGATATCTCTACACAAGAACAGAGCGGTCGGATAAAGCAGCTTCTCCAGCCTCAATCAAAGAGCTGTCATCTGCAACGGCAGTGAGCTATAAAGGCAAATCAACTCGCCACTTGCTCCTGCAGTTACAGTCAACTGGAAGAGATTGCATTGCAAGGACGTTCAGGCCATGAAAACTAGACTAGGGTGCCTGTCTAACAAGTCAGACTCATGCAGCGATTTTTCCGAATTCCTGCCTCCAGCTCAGGAGAGAACCACAAGATACCTGAAATTGTCCAATGATGAAGTGACCAGATGGGCAGACTCTTTCGATATTCTCCTGTCCAATAAATATGGTCTGGCTGCCTTCAGAACCTTCCTGAAAACAGAGTTCAGTGATGAAAACATTGAGTTCTGGTTGGCCTGTGAGGACTATAAAAAGATCAAATCCCCTGCTAAGATGATGTCCAAGGCCAATAAGATCTACAAGGAATTTATTGACGTTCATGCACCCAGAGAGGTCAACATAGACCACAGGACCAGAGAGGAAACCAAAAACAGGCTTCTAGAACCGACTCCACACAGTCTCAACGAAGTGCAAGCTAAAGTGTACAGCCTGATGGAGAAGGACTCGTATCCTCGGTTTATAAGATCAAAGATCTATCAGGACTTACTGAACAGGACACAGATTTACTGTCAGAGGAAGTCTGTTTAAAGGTGAACGTCTGTTTGCTCGCCTGGCTAGATGATATTGAGATAATAAAGCAGACTTTAATTGTTATATATAGCATAGTCTGTGTGTTTGCACAATAATTAGATgagaataatcaaataaaaaaggtCAAAAATGAACTAGTTCCTTTGCTAGTttgcatttaaagtaaaatatgacCCTGTACTGTGCTTTTTTGCCCAGTTTGTAACATGCGGCTCTATTCTCTCCCTTTTGATTGTGATAGAATGCttaatgttttctctgaatgcTGGCAAGCATGTAAATCTACATGGGTTATGTGTAAGAGTAGGGTACAAGAATTTATTTTTCTGATCTTCAATGTCACTTACAGTCTGTTCCGATAAGACAACTGAAGACATGCCTGCTGTTTTGCATGTAGCCTCCAACGTATATATTTAGATTACTCTATTTCCCTTACAATCTAAATCTAAAACAGGTTGATCACAAACATTTGCGCACAACAGATTGTTTTCTCAACtaaaatatatacttaaaaaGTATTTGACAATgtaatatttatgtttgtttattaattaatttagttatttttttcacATGTTGATGTTCTAATGGTTTACAATGACATGTTCTCCAGTGATATAGATCAAGTAAAGCATGTCACTTTAATCATGGTGTTATGTTTTTTTCCCCATGCCTGTGAATAAACAGAATATGCTGCACGTTTTGAATGTTTA

Function

GO:

id name namespace
GO:0007213 G protein-coupled acetylcholine receptor signaling pathway biological_process
GO:0060159 regulation of dopamine receptor signaling pathway biological_process
GO:0009968 negative regulation of signal transduction biological_process
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0030425 dendrite cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0043204 perikaryon cellular_component
GO:0016020 membrane cellular_component
GO:0032809 neuronal cell body membrane cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-264 Predicted to enable GTPase activator activity. Predicted to be involved in G protein-coupled acetylcholine receptor signaling pathway; positive regulation of GTPase activity; and regulation of dopamine receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and negative regulation of signal transduction. Predicted to be located in dendrite; neuronal cell body membrane; and nucleus. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Is expressed in forebrain and retina. Orthologous to human RGS8 (regulator of G protein signaling 8).

Ensembl:

ensembl_id ENSDART00000102461

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065190 lncRNA downstream 371436 35085032 ~ 35090195 (-) True XLOC_032973
TCONS_00064073 lncRNA downstream 422586 35036515 ~ 35039045 (-) False XLOC_032972
TCONS_00065189 lncRNA downstream 504155 34947174 ~ 34957476 (-) False XLOC_032970
TCONS_00064067 lncRNA downstream 504155 34951577 ~ 34957476 (-) True XLOC_032970
TCONS_00064066 lncRNA downstream 507286 34947174 ~ 34954345 (-) False XLOC_032970
TCONS_00064750 lncRNA upstream 261653 35749066 ~ 35749921 (-) True XLOC_032979
TCONS_00064088 lncRNA upstream 423085 35910498 ~ 35914709 (-) False XLOC_032980
TCONS_00064087 lncRNA upstream 423085 35910498 ~ 35914709 (-) False XLOC_032980
TCONS_00064090 lncRNA upstream 423085 35910498 ~ 35914713 (-) False XLOC_032980
TCONS_00064089 lncRNA upstream 424112 35911525 ~ 35914410 (-) False XLOC_032980
TCONS_00064081 mRNA downstream 15521 35443430 ~ 35446110 (-) True XLOC_032976
TCONS_00064080 mRNA downstream 22225 35395050 ~ 35439406 (-) True XLOC_032975
TCONS_00064079 mRNA downstream 60349 35387367 ~ 35401282 (-) False XLOC_032975
TCONS_00064078 mRNA downstream 151407 35136450 ~ 35310224 (-) True XLOC_032974
TCONS_00064077 mRNA downstream 151970 35106115 ~ 35309661 (-) False XLOC_032974
TCONS_00064085 mRNA upstream 188371 35675784 ~ 35779348 (-) False XLOC_032978
TCONS_00064086 mRNA upstream 188461 35675874 ~ 35738836 (-) True XLOC_032978
TCONS_00064092 mRNA upstream 640092 36127505 ~ 36198052 (-) False XLOC_032982
TCONS_00064093 mRNA upstream 643618 36131031 ~ 36182115 (-) False XLOC_032982
TCONS_00064098 mRNA upstream 1063670 36551083 ~ 36552844 (-) False XLOC_032986
TCONS_00064062 other downstream 522924 34932623 ~ 34938707 (-) False XLOC_032969
TCONS_00064061 other downstream 522938 34931950 ~ 34938693 (-) False XLOC_032969
TCONS_00064063 other downstream 522938 34932956 ~ 34938693 (-) False XLOC_032969
TCONS_00064064 other downstream 522945 34933586 ~ 34938686 (-) True XLOC_032969
TCONS_00064057 other downstream 623332 34833148 ~ 34838299 (-) True XLOC_032967
TCONS_00064091 other upstream 425208 35912621 ~ 35913507 (-) False XLOC_032980
TCONS_00064094 other upstream 690932 36178345 ~ 36197764 (-) True XLOC_032982
TCONS_00064097 other upstream 991780 36479193 ~ 36502330 (-) True XLOC_032985
TCONS_00064104 other upstream 1246296 36733709 ~ 36733826 (-) True XLOC_032989
TCONS_00064105 other upstream 1256721 36744134 ~ 36744251 (-) True XLOC_032990

Expression Profile

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