RNA id: TCONS_00064085


Basic Information

Item Value
RNA id TCONS_00064085
length 3246
RNA type mRNA
GC content 0.47
exon number 8
gene id XLOC_032978
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 35675784 ~ 35779348 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGCTGGTCTCAGGTTCATAGCCTTCAGAGATGTTGCTGCATGTGTACGACTACTCAGTGTCCAGAAATCATGGACATCTTTTCAAGGAAGAAGGCGAGGAAAGTTTGGAAAGAATGTCGAGTCGCAGGGTGAAGCATGAGCTGCCAGTGTACTGATTTTAGACTGGCGTATCTGATGAGTCTATGGGTGTGTGTTGTACTAAGCCTTCACTGCTGGGTTCTCGCCCCTGTGGCAGCCTCCCATGATGCCGCTGGTCCATTTGGGTGGCTCCTTTCAGATAAAGGGCCTTTTCATCACTCGCAGGAATTTGCTGAATTTGTGGAGCGTTATCAACAGGGCTTCACAACCAAATACAAGATTTACAGAGAGTTTGGGCGCTGGAAGGTGAACAGCCTGGCTCTGGAGAGAGAGGACAATGGAGTGGCTCTACCCCTCGATCCAGAGTTCATGCAAACCATCAGACAGTTGGGCCGCAGACCCTCCGTTGCTGCCATTACTGAGAACATCATCAGAAAATATGGCACACACTTTCTGCTTTCAGCTACGCTTGGAGGTGAGGAGGCGTTGACTATATTTGTGGACAAGAGGAGGCTTAGCCGGCCGGCGGACCTGACTGACTCAAATGGCACGGCGGTGACTCTGGAGGCCCTGCACCAGCTGGCTGCCTCCTATTTTATAGACAGAGAGAGTACTCTGCGAAAACTGCACCACCTCCAGATCGCCACCACTGCCATCAAGGTGACCGAAACAAGGACAGGCCCTCTTGGATGCAGTAACTATGACAACCTCGATTCTGTCAGTTCCGTTTTGGTTCAGAGTCCAGAGAACAAGATTCATCTACAAGGTCTTCAGGCTATTCTGCCAGAATACTTAAGGAGTCGATTTGTGGAGGCAGCTCTCAGCTATATTGGCTGTCACTCTGAGGGCGAGTTTGTGTGTCGGGATAACGACTGCTGGTGCAAATGCAGTGTGGATTATTCCCAGTGCAACTGTCCCAGTGAAGACCTGAAGGCTATGCAGGACAGTCTGAAACTCATCAGAGAATCATGGACGCAAGCCAACCAAGAGTTTGAAGAGTCTGAGGACTTCCAGAATTTTGTGAGGAGATTACCAACCTTCTATGCTCTGAACACATCTGCCGTGCAGTACTTTTGGAAGATGGACTCTGGCGTTCAGCAGCGCTTTCAGCTTTTGGAGACCAACACTCAACAGCTGCTCAGCAAAGCACAGCGGATTGTCAGCAAACTCTTCAAACTCAGCAAAAGGTGTCGGACTCAACCCAAAATATCTGTGCCCAGGGAGAGGCCTCTGAGCTACTGGCTGAGGTACATCCTTTCCATCATGTACTGCAGCGAGAACAATCAGATCGGGTCCTACATGGAGGAAACACGGACCTGCTCCTGTCATTATGAGCACCCATCCTGCCAAGGTGTCATCCCATGCTCGGTGGGTGACGGCCCTCACTGCGCCTCATGCTCCTACGAGAACCGCTCACGCTGTGCCAGCTGCAATCCTGGATACATGCTGAGCCAAGGGACATGTAGGAATACCATACCAGATTCTACTGACAACTACATTGGTTTCGAGACAGACCTTCAGGATCTGGAACTCCGCTACCTGCTGCAAAAGATGGATGGCCGGATCAGCATTCACGCCATGTTCATAAGCAATGACGTCAGACTCAACaactggttcgatcccagctggAGAAAGAGGATGCTGCTGACGCTAAAGAGCAACAAGTTCAAGTCCAGCCACGTCCACATGCTCCTAGGGATCTCCCTGCAGATTTGCCTTACTAAAAACAGCACCCTGGAACCACTGCTGTCCGTCTACATCAACCCATTTGGAGGTAGCCATTCCGAGAGCTGGATCATGCCCATTGACCAGAACAATTACCCTGACTGGGAAAGGACCAAGTTAGACATCCCGCTTGACTGTTATAACTGGACCCTGACTCTGGGAAACAAGTGGAAAACCTTTTTTGAGACTGTCCACATTTACCTAAGGAGCCGTGTCAAAACGGCATCCCCTCAGGGGAACGGCACTGTCCACTTTGAGCCACTGGAATACATGGACTCATCTCGCAATCTAGGCTACATGAAAATCAACAGTATGCAGGTGTTTGGATACAGTATGCACTTTGATCCAGACGCCATCCAGGACTTGATCCTGCAGCTGGACTATCCGTACACACAGGGCTCGCAGGACTCGGCCTTGCTCCAGCTGCTGGAAATCCGAGATCGGGTCAACCGTCTCTCTCCACCGGGTCAACAACCTCTGGATCTGTTTGCCTGCTTATTGCGCCACCGTCTCAAACTCTCTACCACTGATGTGGTCAGAATCCAAACTGCTCTTCAGGCCTTCAGCGCCAAGCAGCCCAACTCAATGGAGTATGAAACTACCAAACTATGTAGCTAATAAGGCACTGCAAGGTAGCAGTATATTTGTAGCTATTTCAGTAACTGTAGTTAAATGACCTGGTATACTTTCAGAAAAAACACATCGGACACATGCTGGGATACAGTGTTGATGGTGATGCCACAGTTCTGGTGTTTGTTTGAACTACCGATGTAATGGGCCAGTTCAGAAGAATGGCCAAACCTTTGCCTTTTCTTTTCCTAACTGCGGAGATGATTTACAATAGAGTGATGACCTCATTTCAGTTTCATGGCACACTGCAGAATTTAGCGTCGGCCCCCAGACCTGATAAACAATGCGTGCAGTAGGACTTTACTGGAAACTGTCaaattttaaagtaaagttttttgtttgttcaccTCTTTTAATTCTCTGTATGCAAAAACAGAGGCCGTAAACGCATTATGAGCCAAACcttgttcgttttttttttctttctttccttttttatgcTGTCTGTCTACACTGTAACTCTCAAAAATATCAGTATCCTAATCAACAATAGAAGTTGATGCTTAAAACTATTTTTACGATATTTGTTGGAAAATGAATGTAGGagaaaatctgtttaaaaaaatatcacacATCATAAGCAAGGTACTTAATATATGCCGTttcatgtacatttatttttataaaatctaTTATTTGTGAGAAGTTACAAAGGTAATGTCCATACAATGTATAGAACATGAATTTGTTAATACTCTAAATAAAGGTCATTTTTATGTGCCGTCTGTAAATATCTCACTTTGCTTGAATTGCACACAACTTATAACATTATATTTAGAGGCTCTATTtgctgttttaaagggcacctatg

Function

GO:

id name namespace
GO:0071300 cellular response to retinoic acid biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0030425 dendrite cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080218-16 Predicted to be involved in cellular response to retinoic acid; negative regulation of mitotic cell cycle; and positive regulation of neuron differentiation. Predicted to act upstream of or within regulation of cell cycle. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite; endoplasmic reticulum; and neuronal cell body. Is expressed in brain; gill; head; muscle; and trunk. Human ortholog(s) of this gene implicated in coronary artery disease and myocardial infarction. Orthologous to human BRINP3 (BMP/retinoic acid inducible neural specific 3).

Ensembl:

ensembl_id ENSDART00000191159

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065190 lncRNA downstream 585589 35085032 ~ 35090195 (-) True XLOC_032973
TCONS_00064073 lncRNA downstream 636739 35036515 ~ 35039045 (-) False XLOC_032972
TCONS_00065189 lncRNA downstream 718308 34947174 ~ 34957476 (-) False XLOC_032970
TCONS_00064067 lncRNA downstream 718308 34951577 ~ 34957476 (-) True XLOC_032970
TCONS_00064066 lncRNA downstream 721439 34947174 ~ 34954345 (-) False XLOC_032970
TCONS_00064088 lncRNA upstream 131150 35910498 ~ 35914709 (-) False XLOC_032980
TCONS_00064087 lncRNA upstream 131150 35910498 ~ 35914709 (-) False XLOC_032980
TCONS_00064090 lncRNA upstream 131150 35910498 ~ 35914713 (-) False XLOC_032980
TCONS_00064089 lncRNA upstream 132177 35911525 ~ 35914410 (-) False XLOC_032980
TCONS_00065191 lncRNA upstream 134353 35913701 ~ 35914464 (-) True XLOC_032980
TCONS_00064082 mRNA downstream 187604 35459369 ~ 35488180 (-) False XLOC_032977
TCONS_00064083 mRNA downstream 188371 35461631 ~ 35487413 (-) False XLOC_032977
TCONS_00064084 mRNA downstream 202861 35462347 ~ 35472923 (-) True XLOC_032977
TCONS_00064081 mRNA downstream 229674 35443430 ~ 35446110 (-) True XLOC_032976
TCONS_00064080 mRNA downstream 236378 35395050 ~ 35439406 (-) True XLOC_032975
TCONS_00064092 mRNA upstream 348157 36127505 ~ 36198052 (-) False XLOC_032982
TCONS_00064093 mRNA upstream 351683 36131031 ~ 36182115 (-) False XLOC_032982
TCONS_00064098 mRNA upstream 771735 36551083 ~ 36552844 (-) False XLOC_032986
TCONS_00064102 mRNA upstream 938637 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064101 mRNA upstream 938637 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064062 other downstream 737077 34932623 ~ 34938707 (-) False XLOC_032969
TCONS_00064061 other downstream 737091 34931950 ~ 34938693 (-) False XLOC_032969
TCONS_00064063 other downstream 737091 34932956 ~ 34938693 (-) False XLOC_032969
TCONS_00064064 other downstream 737098 34933586 ~ 34938686 (-) True XLOC_032969
TCONS_00064057 other downstream 837485 34833148 ~ 34838299 (-) True XLOC_032967
TCONS_00064091 other upstream 133273 35912621 ~ 35913507 (-) False XLOC_032980
TCONS_00064094 other upstream 398997 36178345 ~ 36197764 (-) True XLOC_032982
TCONS_00064097 other upstream 699845 36479193 ~ 36502330 (-) True XLOC_032985
TCONS_00064104 other upstream 954361 36733709 ~ 36733826 (-) True XLOC_032989
TCONS_00064105 other upstream 964786 36744134 ~ 36744251 (-) True XLOC_032990

Expression Profile

//