RNA id: TCONS_00064750


Basic Information

Item Value
RNA id TCONS_00064750
length 856
lncRNA type intronic
GC content 0.35
exon number 1
gene id XLOC_032979
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 35749066 ~ 35749921 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agtcaagctatttgTAGTTCCTAAAGCTTGTattggcgacaagacttttgtcgggtaGTGTAGTATAATAGCTGGTATGTGTAACTTAAAATAGATCAGTTGTCAAAACTAAagtataaattagtttttaagaCTATCATAACTATTCACATGTATGGTTAGTTGCGATTATCACTTCAGTGTTTGCGTTCAATGATATTGTTTCCCATCATTACAGTCTGACTCCCCAAATTATTAGTATTGTTTGCATACACTGTGCTACATGTTCAGCCATATGAACTGTAGTTTATAGTCTTTCTATTGCCATAATGAAGCCAACAAAGTATGAACAAAGAGTGcagataaaataaaaaggaaactGTTGAGCTAAATCTGATATTTGCAGACTGATGTCCACCAGACTCACCCCTTAGACTGTGCCATTCATCAAGCAACTACTACAATTCATTGTGCTGTGATATGCCATTTTCTATCAATGACCTGTACAATCCGTTCATTCCCCAGACAAATGCCACCAAGTCCTTTTAAGTCCACCTTATTCAAGCAAAAAGTCACGCCACAGCTAAGATGGGAAAATTGTGTTGCCTCTCGACCATGACAGAATCTAATATCAAGATGGATCTATTTTGAGGGCAGAACATCACACAAATAATGCATCTCTTCAgtggtttattaaaaaaaaaaaaaatgccattagCAAATGGCCTGAGTATTGCAATGACAGTACTCCCCCTTCTTTTaagtatttcatttaaaatatttatttattttccccaaCAATAGGTCGGCTTGTAATATCAAaaggttttatttaataatattgcttTCTATCGAATAACCTTTTTTTCAAGAGATC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065190 lncRNA downstream 658871 35085032 ~ 35090195 (-) True XLOC_032973
TCONS_00064073 lncRNA downstream 710021 35036515 ~ 35039045 (-) False XLOC_032972
TCONS_00065189 lncRNA downstream 791590 34947174 ~ 34957476 (-) False XLOC_032970
TCONS_00064067 lncRNA downstream 791590 34951577 ~ 34957476 (-) True XLOC_032970
TCONS_00064066 lncRNA downstream 794721 34947174 ~ 34954345 (-) False XLOC_032970
TCONS_00064088 lncRNA upstream 160577 35910498 ~ 35914709 (-) False XLOC_032980
TCONS_00064087 lncRNA upstream 160577 35910498 ~ 35914709 (-) False XLOC_032980
TCONS_00064090 lncRNA upstream 160577 35910498 ~ 35914713 (-) False XLOC_032980
TCONS_00064089 lncRNA upstream 161604 35911525 ~ 35914410 (-) False XLOC_032980
TCONS_00065191 lncRNA upstream 163780 35913701 ~ 35914464 (-) True XLOC_032980
TCONS_00064086 mRNA downstream 10230 35675874 ~ 35738836 (-) True XLOC_032978
TCONS_00064082 mRNA downstream 260886 35459369 ~ 35488180 (-) False XLOC_032977
TCONS_00064083 mRNA downstream 261653 35461631 ~ 35487413 (-) False XLOC_032977
TCONS_00064084 mRNA downstream 276143 35462347 ~ 35472923 (-) True XLOC_032977
TCONS_00064081 mRNA downstream 302956 35443430 ~ 35446110 (-) True XLOC_032976
TCONS_00064092 mRNA upstream 377584 36127505 ~ 36198052 (-) False XLOC_032982
TCONS_00064093 mRNA upstream 381110 36131031 ~ 36182115 (-) False XLOC_032982
TCONS_00064098 mRNA upstream 801162 36551083 ~ 36552844 (-) False XLOC_032986
TCONS_00064102 mRNA upstream 968064 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064101 mRNA upstream 968064 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064062 other downstream 810359 34932623 ~ 34938707 (-) False XLOC_032969
TCONS_00064061 other downstream 810373 34931950 ~ 34938693 (-) False XLOC_032969
TCONS_00064063 other downstream 810373 34932956 ~ 34938693 (-) False XLOC_032969
TCONS_00064064 other downstream 810380 34933586 ~ 34938686 (-) True XLOC_032969
TCONS_00064057 other downstream 910767 34833148 ~ 34838299 (-) True XLOC_032967
TCONS_00064091 other upstream 162700 35912621 ~ 35913507 (-) False XLOC_032980
TCONS_00064094 other upstream 428424 36178345 ~ 36197764 (-) True XLOC_032982
TCONS_00064097 other upstream 729272 36479193 ~ 36502330 (-) True XLOC_032985
TCONS_00064104 other upstream 983788 36733709 ~ 36733826 (-) True XLOC_032989
TCONS_00064105 other upstream 994213 36744134 ~ 36744251 (-) True XLOC_032990