Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00064095 |
| length | 836 |
| lncRNA type | lincRNA |
| GC content | 0.32 |
| exon number | 4 |
| gene id | XLOC_032983 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 36287538 ~ 36290625 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0001704 | formation of primary germ layer | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0001757 | somite specification | biological_process |
| GO:0035282 | segmentation | biological_process |
| GO:0009880 | embryonic pattern specification | biological_process |
| GO:0009952 | anterior/posterior pattern specification | biological_process |
| GO:0007379 | segment specification | biological_process |
| GO:0003002 | regionalization | biological_process |
| GO:0007389 | pattern specification process | biological_process |
| GO:0061053 | somite development | biological_process |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003690 | double-stranded DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| GO:0000987 | cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0140110 | transcription regulator activity | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| GO:0001067 | regulatory region nucleic acid binding | molecular_function |
| GO:1990837 | sequence-specific double-stranded DNA binding | molecular_function |
| ensembl_id | ENSDART00000139278 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00064751 | lncRNA | downstream | 162648 | 36121319 ~ 36124890 (-) | True | XLOC_032981 |
| TCONS_00064090 | lncRNA | downstream | 372825 | 35910498 ~ 35914713 (-) | False | XLOC_032980 |
| TCONS_00064088 | lncRNA | downstream | 372829 | 35910498 ~ 35914709 (-) | False | XLOC_032980 |
| TCONS_00064087 | lncRNA | downstream | 372829 | 35910498 ~ 35914709 (-) | False | XLOC_032980 |
| TCONS_00065191 | lncRNA | downstream | 373074 | 35913701 ~ 35914464 (-) | True | XLOC_032980 |
| TCONS_00065193 | lncRNA | upstream | 95667 | 36386292 ~ 36393495 (-) | True | XLOC_032984 |
| TCONS_00064099 | lncRNA | upstream | 261111 | 36551736 ~ 36552747 (-) | True | XLOC_032986 |
| TCONS_00065194 | lncRNA | upstream | 330685 | 36621310 ~ 36628097 (-) | True | XLOC_032987 |
| TCONS_00065195 | lncRNA | upstream | 1051703 | 37342328 ~ 37344594 (-) | True | XLOC_032992 |
| TCONS_00064129 | lncRNA | upstream | 1457930 | 37748555 ~ 37749697 (-) | True | XLOC_033005 |
| TCONS_00064092 | mRNA | downstream | 89486 | 36127505 ~ 36198052 (-) | False | XLOC_032982 |
| TCONS_00064093 | mRNA | downstream | 105423 | 36131031 ~ 36182115 (-) | False | XLOC_032982 |
| TCONS_00064085 | mRNA | downstream | 508190 | 35675784 ~ 35779348 (-) | False | XLOC_032978 |
| TCONS_00064086 | mRNA | downstream | 548702 | 35675874 ~ 35738836 (-) | True | XLOC_032978 |
| TCONS_00064082 | mRNA | downstream | 799358 | 35459369 ~ 35488180 (-) | False | XLOC_032977 |
| TCONS_00064098 | mRNA | upstream | 260458 | 36551083 ~ 36552844 (-) | False | XLOC_032986 |
| TCONS_00064102 | mRNA | upstream | 427360 | 36717985 ~ 36795219 (-) | False | XLOC_032988 |
| TCONS_00064101 | mRNA | upstream | 427360 | 36717985 ~ 36795219 (-) | False | XLOC_032988 |
| TCONS_00064100 | mRNA | upstream | 427360 | 36717985 ~ 36795219 (-) | False | XLOC_032988 |
| TCONS_00064103 | mRNA | upstream | 429538 | 36720163 ~ 36795160 (-) | False | XLOC_032988 |
| TCONS_00064094 | other | downstream | 89774 | 36178345 ~ 36197764 (-) | True | XLOC_032982 |
| TCONS_00064091 | other | downstream | 374031 | 35912621 ~ 35913507 (-) | False | XLOC_032980 |
| TCONS_00064062 | other | downstream | 1348831 | 34932623 ~ 34938707 (-) | False | XLOC_032969 |
| TCONS_00064061 | other | downstream | 1348845 | 34931950 ~ 34938693 (-) | False | XLOC_032969 |
| TCONS_00064097 | other | upstream | 188568 | 36479193 ~ 36502330 (-) | True | XLOC_032985 |
| TCONS_00064104 | other | upstream | 443084 | 36733709 ~ 36733826 (-) | True | XLOC_032989 |
| TCONS_00064105 | other | upstream | 453509 | 36744134 ~ 36744251 (-) | True | XLOC_032990 |
| TCONS_00064106 | other | upstream | 479314 | 36769939 ~ 36770069 (-) | True | XLOC_032991 |
| TCONS_00064111 | other | upstream | 1148630 | 37439255 ~ 37439370 (-) | True | XLOC_032996 |
