RNA id: TCONS_00064103


Basic Information

Item Value
RNA id TCONS_00064103
length 4305
RNA type mRNA
GC content 0.44
exon number 29
gene id XLOC_032988
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36717985 ~ 36795219 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGCACTTGACACTAGCGATCGCCTGCTTGTGATGCCCTTGTTAGCCACGCAGCTAACATATGTGTCCCATTTggaaagatgaattgaattttataCTGCAAAGAGATCCTAAACTCATCTATATTTGCCATTAGTTAATAATAGCAGGATGTTGCGAGCCGGAAGTGTAGTTACCTGCATTGCCTGCAAGGGTTTGCTTCCCTCCAGGATGGGGGTGAAGTTCAGAGTCCCATTGCAGAAACTGCACCCGCTCTCCCGTGCCATCCATCACCGCTACTCTGCTAACAACAACCCACAGAGACCACCTCACTGCTCAGCTGCCCGGCATTACACATCTCTCTCCAGGCTTCCCATGCGTCCTCCCAAATCACGCTCTGGAGGCCACGGCTATCAACAGCATCGGACCTTCTGGGTGGCCCGTCTCGCCGCCAGACTGCTGAAACTGAGGTACATCTTGCTTGGCTCAGCGGTTGGAGGTggatacactgcaaaaaagACCTATGATGAATGGAAGGAAATGCTCCCTGATATGAGTGAATACACATGGATTGTGCCAGACTTTGTTTGGGAGCTGAGCGAAAATATAGATTTAGACAAGCTAGCCAGTGCTTTACCTGAATTAGAAGAGATAGCCAAACTACTACCTGATATGGAGAAGATCGGAGAGAATTTCACCTTCCTGAAGAGCCTCCTCTCCAGCGaAACTACTGGCGAATCGGCCCTAAGAGCACCAGACGTCCCACCAGCATCTGCAGCCATGGCTGACAGCGGAGACAAGCAGTTCAAGAAGTCATCCGATAAAGAGAAAGTTGACCAGCTTCAGGAGGAACTTCTTCGAACTCAGTTGAAGTACCAACGGATGCTTGAGCGCTTggaaaaggaaaataaagaatTGAGGAAAGTTGTATTGCAGAAGGATGACAAGGGTATTCACCAAAGAAAAGTCAAGAAATCTTTGATTGATATGTACTCTGAGGTCCTGGACATTCTTTCAGATTATGACTCCAACTACAACACTCAAGATCACCTGCCAAGGgtgGTGGTAGTTGGGGACCAGAGTGCGGGAAAGACTAGTGTGCTGGAGATGATTGCTCAAGCTAGGATCTTTCCGAGAGGCTCTGGAGAAATGATGACAAGGTCTCCTGTCAAGGTGACTTTGAGTGAAGGCCCTCACCATGTAGCAATGTTTAAAGACAGCTCTCGGGAGTTTGACCTTGGCAAAGAGGAAGATcTTGCAGCACTGAGGCATGAGATTGAGCTCAGGATGAGGAAGAGTGTGAAGGAAGGTCAGACAGTCAGCCCTGAGACCATCTCTTTAAGTGTTAAGGGCCCTGGAATCCAGCGAATGGTGCTTGTAGATTTACCAGGGGTCATCAGTACTGTGACAACTGGAATGGCCGCAGACACAAAGGAAACCATTTTTAGCATTAGTAAAGCTTACATGCAGAATCCAAACGCCATCATCCTCTGTATACAGGATGGCTCAGTAGATGCAGAGCGCAGTATAGTCACTGATCTGGTCAGTCAAATGGACCCTCAGGGCAAAAGGACCATATTTGTTCTTACTAAGGTTGATCTGGCAGAAAAGAACCTGGCTAGTCCAAGCAGAATCCAGCAAATAGTAGAAGGCAAATTATTCCCAATGAAGGCTTTGGGCTACTTTGCTGTAGTAACTGGCAAAGGCAGCCCTAATGAGAGCATAGATTCCATTAAAGACTATGAGGAGGACTTCTTCCAGAACTCAAGACTGCTGAAGGATGGCATGTTGAAAGCTCATCAGGTGACTACAAAGAACCTGAGTCTTGCTGTGTCAGACTGTTTCTGGAAAATGGTCAGAGAGTCAGTAGAGCAACAAGCAGATGCCTTTAAAGCTTCTCGATTTAACCTGGAGACTGAGTGGAAGAACAACTATCCTCGCTTACGAGAGCTGGACAGGAACGAGCTCTACGAGAAGGCCAAAAATGAGATCTTGGATGAGGTGATCAGCTTGAGTCAAGTTACACCAAAACACTGggaGTCTATCTTACAGAAGAAGCTTTGGGAAAGAGTCTCGACACACGTCATAGAGAACATCTACCTGCCTGCTGCACAGACCATGAACTCTGGAACTTTTAACACCACTGTAGACATCAAACTCAAGCAATGGACTGATAAACAACTTCCTCATAAAGCACTAGAGGTTGCTTGGGAGACTTTGCAGGAAGAGTTTGCCCGCTTCATGGCCGAATACAAAGGGAAAGACCAGGATGACATTTTTGACAAGCTGAAGGAAGCTGTCAAGGACGAGAGCATCAAACGACACAAGTGGAATGAAAGAGCCATGGACAGCTTGAGAGTGATTCAACACAACGCTCTGGAGGATCGTTCAATCACAGACAAGCCCCAGTGGGATGCCGCTATACAGTTCATGGAGGAAACGCTGCAGTCTCGTCTTAAAGACACTGAGTCAGTAATAGCTGATATGGTGGGGCCAGACTGGAAGCAGAGGTGGATGAGCTGGAAAAACCGAACACCAGAGCAGCACACCCGGAATGAAACCAAAAATGAGCTGGAGCGTCTGCTGAAACTGCATGAGGATCACACAGCATATTTGGCCAATGATGAGGTCACTACAGTGCGCAAAAACCTGGAGGCCCGAGGGGTGGAGGTGGACCCTGTATTGATTAAGGACACATGGCATCAGCTCTTTCGACGTCACTTCCTACAGAAGGCACTACTACATTGCAACCTCTGCAGACGAGGTTTCTACTACTATCAGAGGCACTTCGTAGACTCTGAGCTTGAGTGCAATGATGTGGTTCTGTTCTGGAGGATTCAGAGGATGTTGGGCATCACTGCCAATACTCTTCGACAACAGCTCACTAACACTGAGGtACGGCGTTTGGAGAAGAACGTTAAAGAAGTATTAGAAGACTTTGGAGAGGACAATGAGAAAAAAGTCCAGCTGATCACAGGCAGGAGGGTTCAACTGGCAGAAGACCTCAAAAAAGTTCGCGAAATTCAGGAGAAACTTGAAGCCTTCATTGAAGCTCTTCACAAAGAGAAGTAGAGCAgATCATCTTGTTTCtgggcagacagacaggcagacatgCTCTTACACAAGAAAATGCACTGATCAAAAACCATCATTTTTTCCTCTTTGCTCCTTTGCAAAGGACTTTCCTTCCAACTTCTTCTGTTTTTAACAGCTCCTGTTGTATGttctcacaaaacacacacacaaacacacacacacacacactcttccctCTTTAAAACAGTGAAAATAAGTGAACTAAGCTGGAGTCCCTTTACATTTactgcatatttattaattttggacAAAAAGCACTTACTCTGCTATCAGAATAATGGTACACATTGCAGTGCCATGCTTTATTCTTTCTTCACTCAAAGCTTCAAAAAACAATATTTGCACCAGAGAAACCATTCAGACAGGCATACACAACCATAATCTCTCATCCTCTGTTCCCAATAAATGACTTGCTCCAGGTCTCTCTTTCCCCTgactttctttattatttaagGTGACATTTTATGGATAAGTGCTAAATGCTAAAACGCATCTTTACTGATTGGCCTTGATAGAGAAATTGTTCTAAAATGTTTTCTCACCAGAAGCTGCGATTTCATATCTCATTGCCATCACAAGTCACAGATCTTTTTGTTTTCCTTCAcctaaaaattatgttttgtaatTATGTAGAATCCTCTATTAATATATGCAGATGTTTGTTACCGTTTTTGCTACTTGTAGTCCCATTTAGCTcagtttattatgtttaataaacTGTGATTGGCTTGATCTTGAAGATGCAAAGTTATGGATACATTAACCGCATTATATCATCTGCTGGATGAAAACTTGTTCAATACTTTTGTTCCTaacatcattttcatttcatttcttttGCTACTTTGAATGGTTCTTATTTTTCATCTGCCATCTTCAACTATAGTgcacttttattttttgcttgcacATTTTATATCTCGCTCCCTGGATTTGATATGAAATCCACTTTAATATCCTGATAATTTCGAGTGTAAGAGATGCCACAACTCAATGTAAAtggtaaatatatttgtaaagtctcCGTAGAGTAAGTTCATTCAAATGATGAATCTGTTGTCACAAGGGGAAATATATGAGTGTGGTGCTTGTAGCAAAGTAGATGTCGGTTCATTTAAGAATGCTTCCCCTATTTGCTGTAGATTGTAATGTTTGCATGTTGTATCCCATCCgatgtggtttatttattaaattggtgTTAAAGAAAAGAAGAATAAAAGTGACTTTAAA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0003374 dynamin family protein polymerization involved in mitochondrial fission biological_process
GO:0043009 chordate embryonic development biological_process
GO:0046039 GTP metabolic process biological_process
GO:0055015 ventricular cardiac muscle cell development biological_process
GO:0070584 mitochondrion morphogenesis biological_process
GO:0007005 mitochondrion organization biological_process
GO:0048285 organelle fission biological_process
GO:0061025 membrane fusion biological_process
GO:0097749 membrane tubulation biological_process
GO:0008053 mitochondrial fusion biological_process
GO:0000266 mitochondrial fission biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0070300 phosphatidic acid binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:1901612 cardiolipin binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008289 lipid binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko05017 Spinocerebellar ataxia
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-041114-7 Predicted to enable GTPase activity; microtubule binding activity; and phospholipid binding activity. Acts upstream of or within chordate embryonic development; mitochondrion morphogenesis; and ventricular cardiac muscle cell development. Predicted to be located in mitochondrial inner membrane and mitochondrial intermembrane space. Predicted to be integral component of membrane. Predicted to be active in microtubule and mitochondrial membrane. Is expressed in retina. Human ortholog(s) of this gene implicated in Behr syndrome; dominant optic atrophy plus syndrome; mitochondrial DNA depletion syndrome 14; optic atrophy; and optic atrophy 1. Orthologous to human OPA1 (OPA1 mitochondrial dynamin like GTPase).

Ensembl:

ensembl_id ENSDART00000104256

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065194 lncRNA downstream 92066 36621310 ~ 36628097 (-) True XLOC_032987
TCONS_00064099 lncRNA downstream 167416 36551736 ~ 36552747 (-) True XLOC_032986
TCONS_00065193 lncRNA downstream 326668 36386292 ~ 36393495 (-) True XLOC_032984
TCONS_00065192 lncRNA downstream 430289 36287886 ~ 36289874 (-) True XLOC_032983
TCONS_00064096 lncRNA downstream 430302 36287871 ~ 36289861 (-) False XLOC_032983
TCONS_00065195 lncRNA upstream 547168 37342328 ~ 37344594 (-) True XLOC_032992
TCONS_00064129 lncRNA upstream 953395 37748555 ~ 37749697 (-) True XLOC_033005
TCONS_00065196 lncRNA upstream 1337351 38132511 ~ 38358080 (-) False XLOC_033006
TCONS_00065197 lncRNA upstream 1964386 38759546 ~ 38763847 (-) False XLOC_033009
TCONS_00065198 lncRNA upstream 1964386 38759546 ~ 38764324 (-) False XLOC_033009
TCONS_00064098 mRNA downstream 167319 36551083 ~ 36552844 (-) False XLOC_032986
TCONS_00064092 mRNA downstream 522111 36127505 ~ 36198052 (-) False XLOC_032982
TCONS_00064093 mRNA downstream 538048 36131031 ~ 36182115 (-) False XLOC_032982
TCONS_00064085 mRNA downstream 940815 35675784 ~ 35779348 (-) False XLOC_032978
TCONS_00064108 mRNA upstream 594523 37389683 ~ 37403444 (-) True XLOC_032993
TCONS_00064109 mRNA upstream 614398 37409558 ~ 37422841 (-) True XLOC_032994
TCONS_00064110 mRNA upstream 636009 37431169 ~ 37441520 (-) True XLOC_032995
TCONS_00064113 mRNA upstream 656181 37451341 ~ 37460178 (-) False XLOC_032998
TCONS_00064114 mRNA upstream 658520 37453680 ~ 37459759 (-) True XLOC_032998
TCONS_00064097 other downstream 217833 36479193 ~ 36502330 (-) True XLOC_032985
TCONS_00064094 other downstream 522399 36178345 ~ 36197764 (-) True XLOC_032982
TCONS_00064091 other downstream 806656 35912621 ~ 35913507 (-) False XLOC_032980
TCONS_00064063 other downstream 1781470 34932956 ~ 34938693 (-) False XLOC_032969
TCONS_00064111 other upstream 644095 37439255 ~ 37439370 (-) True XLOC_032996
TCONS_00064112 other upstream 651868 37447028 ~ 37447143 (-) True XLOC_032997
TCONS_00064119 other upstream 702986 37498146 ~ 37498856 (-) True XLOC_033000
TCONS_00064123 other upstream 820206 37615366 ~ 37615483 (-) True XLOC_033003
TCONS_00064130 other upstream 1337351 38132511 ~ 38357713 (-) False XLOC_033006

Expression Profile

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