RNA id: TCONS_00064108


Basic Information

Item Value
RNA id TCONS_00064108
length 1861
RNA type mRNA
GC content 0.42
exon number 12
gene id XLOC_032993
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37389683 ~ 37403444 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGGACACAGCATATCACCGTCAGCTGCAGGCATGTCTTCAGAGATGCAGAGAGACAGCTATGCCGGTTTCCAGCCGCTCTTCAAGTCATTCGCCACAAATGCGATCCACGTTGGTTCAGAACCCGAGCAGTGGAGCTCTATGGCCGTAGTGCCTCCTATTTCACTGTCCACCACCTTTAAACAGCACGGCCCCGGAAAACATGAGGGATATGAGTATATCAAGACTGGTAATCCCACCAGAAACTGTCTCGAGAGAGCTGTGGCTTGTTTGGATGGTGCAAAATACTGTGTTGCTTTTGCCTCTGGAATAGCAGCGACTGCGACCATCACCCATCTTTTAAAGCATGGAGATGGAATTGTGTGCATGTATGATATATATGGAGGAACTAAAGAATATTTCAGAGAAATAATTACAGAATTTGACATTGATGCATCTTTTGTTGACTTCACAAAGCTGGAGGAGCTGAAAGCagctttaaaacaaaatacaaagATGGTTTGGTTTGAAACCCCCACAAACCCTACATTAAAGGTTGTGGACATCCAGGCCTGTGCAGATATTGTGCATAAACACAACAAGGACACACTTGTTGTTGTGGACAACACATTCATGTCTCCCTACTTCCAGCGCCCCCTTGCACTTGGAGCGGACATCTGCATGTGCTCTGGAACAAAATATATGAATGGACACAGCGATGTTCTCATGGGGCTTATTTCTGTCAATCGTGAGGACCTCTATAAGCGACTGAAGGTTTTGCAAAATGCTGTTGGTGCTGTGCCGTCTCCATTTGACTGTTACATGTGCAATCGGGGTCTAAAGACGCTGCACCTGAGGATGAAGCAGCACTTTAAGAATGCACTGGCTGTTGCACAGTTTTTAGAGGCCGACCCGAGGGTGGACAGTGTCATCTTCCCAGgtctTCCTTCTCACCCTCAACATGAGCTGGCAAAAAGACAGTGCCGAGGCTGTTCTGGGATGGTCTCGTTCTACATAAAAGGACAACTTGAGCATGCCTCAACCTTCCTCAGCAATCTGAAGGTGGTTGCACTTGCTGAAAGTCTTGGTGGTATTGAGAGTCTAGCAAAGCTTCCAGCGACTATGCCTCATGTTTCACTGAGTAAGGATGAAAGGGAAAAGCTGGGCATCAGTGATACACTCATCCGTCTTTCAGTGGGTCTGGAGGACGAGGAAGATATTATTGCAGATCTGGACCAAGCTCTTAGTGCTGCAcatcCAAAAAAGTAAGAGGGTGATCAAGATCAATCAAGAACAGAAGTGATGCCACGTGCCACAAAATAATGTCTTTGTCATCTTGTCcacatttctaatttacttgcTACATGACAGTCGCTTGAAAAACATTAATTGCATCTGTCACAGTACAAAAATAATCTTCAAGAAACTCATTTGCCATCATTCATTCAAAGGAGAATTGCTGCTTTTGCatttctaccttttttttttattattattattattttttagtaattATAGTTTGAGGCAGTGGGCAGCCAAACAGGCGCTCTGCTATTAAAGGTTTTAATATAGGAAAATGCTTGCACtgcaaggaaaaaaaacaatatcattctaatgaagatttttatttgccttttttataTAGACTATTCAAGTGAGTTATTCAAGAATATGTAACAAGAACTACAACAAATAGAATAGACAGCTTTAAAGTAATGCACAAGCACAATCAAATCTTTAGTTTCTGCATCAATAATGAGGCTCAATCACTTCATAATGTTCGAATCACCCATCTTTGACCCGTGTGGGTTTTTCAAATACTGATTAGATGCTTGAGTGTTTTTGAATTTGTGCATTTATAGTAAATGAAATGTGATGACTGA

Function

GO:

id name namespace
GO:0019343 cysteine biosynthetic process via cystathionine biological_process
GO:0019346 transsulfuration biological_process
GO:0005737 cytoplasm cellular_component
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0016846 carbon-sulfur lyase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004123 cystathionine gamma-lyase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040905-3 Predicted to enable cystathionine gamma-lyase activity and pyridoxal phosphate binding activity. Predicted to be involved in cysteine biosynthetic process via cystathionine and transsulfuration. Predicted to act upstream of or within cysteine biosynthetic process. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDART00000136314

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065195 lncRNA downstream 45089 37342328 ~ 37344594 (-) True XLOC_032992
TCONS_00065194 lncRNA downstream 761586 36621310 ~ 36628097 (-) True XLOC_032987
TCONS_00064099 lncRNA downstream 836936 36551736 ~ 36552747 (-) True XLOC_032986
TCONS_00065193 lncRNA downstream 996188 36386292 ~ 36393495 (-) True XLOC_032984
TCONS_00065192 lncRNA downstream 1099809 36287886 ~ 36289874 (-) True XLOC_032983
TCONS_00064129 lncRNA upstream 345111 37748555 ~ 37749697 (-) True XLOC_033005
TCONS_00065196 lncRNA upstream 729067 38132511 ~ 38358080 (-) False XLOC_033006
TCONS_00065197 lncRNA upstream 1356102 38759546 ~ 38763847 (-) False XLOC_033009
TCONS_00065198 lncRNA upstream 1356102 38759546 ~ 38764324 (-) False XLOC_033009
TCONS_00065199 lncRNA upstream 1356102 38759546 ~ 38764326 (-) False XLOC_033009
TCONS_00064102 mRNA downstream 594464 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064101 mRNA downstream 594464 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064100 mRNA downstream 594464 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064103 mRNA downstream 594523 36720163 ~ 36795160 (-) False XLOC_032988
TCONS_00064107 mRNA downstream 594572 36770633 ~ 36795111 (-) True XLOC_032988
TCONS_00064109 mRNA upstream 6114 37409558 ~ 37422841 (-) True XLOC_032994
TCONS_00064110 mRNA upstream 27725 37431169 ~ 37441520 (-) True XLOC_032995
TCONS_00064113 mRNA upstream 47897 37451341 ~ 37460178 (-) False XLOC_032998
TCONS_00064114 mRNA upstream 50236 37453680 ~ 37459759 (-) True XLOC_032998
TCONS_00064115 mRNA upstream 56825 37460269 ~ 37469775 (-) False XLOC_032999
TCONS_00064106 other downstream 619614 36769939 ~ 36770069 (-) True XLOC_032991
TCONS_00064105 other downstream 645432 36744134 ~ 36744251 (-) True XLOC_032990
TCONS_00064104 other downstream 655857 36733709 ~ 36733826 (-) True XLOC_032989
TCONS_00064097 other downstream 887353 36479193 ~ 36502330 (-) True XLOC_032985
TCONS_00064094 other downstream 1191919 36178345 ~ 36197764 (-) True XLOC_032982
TCONS_00064111 other upstream 35811 37439255 ~ 37439370 (-) True XLOC_032996
TCONS_00064112 other upstream 43584 37447028 ~ 37447143 (-) True XLOC_032997
TCONS_00064119 other upstream 94702 37498146 ~ 37498856 (-) True XLOC_033000
TCONS_00064123 other upstream 211922 37615366 ~ 37615483 (-) True XLOC_033003
TCONS_00064130 other upstream 729067 38132511 ~ 38357713 (-) False XLOC_033006

Expression Profile

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