RNA id: TCONS_00064110


Basic Information

Item Value
RNA id TCONS_00064110
length 1299
RNA type mRNA
GC content 0.42
exon number 10
gene id XLOC_032995
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37431169 ~ 37441520 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCACAACTTACTGTTCAGAACAGTATAACAATGTCTGGTATCGTTAAGGCAATGTCGAAGTTTCGACTGGCTGTGGTGCAGTTGCATGTGTCAAAGATTAAAGCAGACAATTTAGGAAGAGCACAAACACTTGTGACGGAGGCTGCAGGACAAGGTGCaaaagttgttgttttaccaGAGTGCTTCAACTCGCCTTATGGAACTGGGTTTTTTAAAGAGTATGCTGAGAAAATTCCTGGAGAGTCCACGCAGGTGTTGTCAGAGACCGCCAAAAAGTGTGGGATCTATTTAGTTGGTGGTTCCATTCCAGAGGAGGATGGAGGGAAGCTCTACAACACCTGCTCGGTTTTTGGACCTGATGGAAAGCTGCTTGTCACACACAGAAAAATTCATCTCTTTGATATCGACGTACCAGGAAAAATACGATTTCAGGAGTCTGAAACACTAAGTCCAGGCAAAAGTTTATCTATGTTTGAGACCCCATATTGTAAAGTAGGTGTGGGAATTTGTTATGACATCCGGTTTGCAGAGCTTGCACAAATCTATGCTAAGAAAGGTTGCCAGCTTTTGGTGTATCCTGGTGCTTTCAATATGACCACAGGTCCTGCTCACTGGGAGCTGCTGCAGAGGGGGAGGGCAGTAGATAATCAAGTCTATGTGGCCACTGCTTCACCTGCAAGAGATGAGACAGCCAGCTATGTGGCTTGGGGTCACAGTTCTGTGATAAACCCTTGGGGGGAAGTAATTAGCAAAGCCGGATCAGAGGAATCTGTTGTTTATGCTGACATAGACCTGCAGTATTTGGCTGATGTGCGTCAACAGATCCCCATCACCAAACAGCGACGGAATGATCTATATAGTGTTAACAGTGTTCAGGAGGGCTGAATGCTTGAAAAGAGGAGGCACTGCAGCGAACATTAAGTCTTGATTCAAGGCAGACTCAGTCAGCACTTTGTGTTGGACACAAGCTCTAATGTAGGGAATCACACAAATAAGATTTTACAATTACTGGGAACAACCAAGTGCTGCACTCTTACTGATTTTCTTGCTGATCATTTCATTGGGAATTAAATTTGGAATATATAAAAGAggtcattatattttatatactttcTTTGATACTTTAACATATTAATATAGTGGTGCAAACATTGGACATGATATTTTTGAGCTGGTGTATTGCTCCATCATCATGAGAGTAACATAAAGCAGGGTATTTTCAAATCAGAATAATTGGCCTTAATGTTGTCATTGAATTCAATTCCAAATTGACAATTAAAATATAGTCTGACTCTGGAA

Function

GO:

id name namespace
GO:0006107 oxaloacetate metabolic process biological_process
GO:0006528 asparagine metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0006541 glutamine metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0050152 omega-amidase activity molecular_function

KEGG:

id description
ko00250 Alanine, aspartate and glutamate metabolism

ZFIN:

id description
ZDB-GENE-050522-65 Predicted to enable omega-amidase activity. Predicted to be involved in asparagine metabolic process; glutamine metabolic process; and oxaloacetate metabolic process. Predicted to act upstream of or within nitrogen compound metabolic process. Predicted to be located in cytoplasm. Is expressed in pronephric duct. Orthologous to human NIT2 (nitrilase family member 2).

Ensembl:

ensembl_id ENSDART00000132586

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065195 lncRNA downstream 86575 37342328 ~ 37344594 (-) True XLOC_032992
TCONS_00065194 lncRNA downstream 803072 36621310 ~ 36628097 (-) True XLOC_032987
TCONS_00064099 lncRNA downstream 878422 36551736 ~ 36552747 (-) True XLOC_032986
TCONS_00065193 lncRNA downstream 1037674 36386292 ~ 36393495 (-) True XLOC_032984
TCONS_00065192 lncRNA downstream 1141295 36287886 ~ 36289874 (-) True XLOC_032983
TCONS_00064129 lncRNA upstream 307035 37748555 ~ 37749697 (-) True XLOC_033005
TCONS_00065196 lncRNA upstream 690991 38132511 ~ 38358080 (-) False XLOC_033006
TCONS_00065197 lncRNA upstream 1318026 38759546 ~ 38763847 (-) False XLOC_033009
TCONS_00065198 lncRNA upstream 1318026 38759546 ~ 38764324 (-) False XLOC_033009
TCONS_00065199 lncRNA upstream 1318026 38759546 ~ 38764326 (-) False XLOC_033009
TCONS_00064109 mRNA downstream 8328 37409558 ~ 37422841 (-) True XLOC_032994
TCONS_00064108 mRNA downstream 27725 37389683 ~ 37403444 (-) True XLOC_032993
TCONS_00064101 mRNA downstream 635950 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064113 mRNA upstream 9821 37451341 ~ 37460178 (-) False XLOC_032998
TCONS_00064114 mRNA upstream 12160 37453680 ~ 37459759 (-) True XLOC_032998
TCONS_00064115 mRNA upstream 18749 37460269 ~ 37469775 (-) False XLOC_032999
TCONS_00064116 mRNA upstream 19956 37461476 ~ 37468971 (-) True XLOC_032999
TCONS_00064117 mRNA upstream 37245 37478765 ~ 37513133 (-) False XLOC_033000
TCONS_00064106 other downstream 661100 36769939 ~ 36770069 (-) True XLOC_032991
TCONS_00064105 other downstream 686918 36744134 ~ 36744251 (-) True XLOC_032990
TCONS_00064104 other downstream 697343 36733709 ~ 36733826 (-) True XLOC_032989
TCONS_00064097 other downstream 928839 36479193 ~ 36502330 (-) True XLOC_032985
TCONS_00064094 other downstream 1233405 36178345 ~ 36197764 (-) True XLOC_032982
TCONS_00064112 other upstream 5508 37447028 ~ 37447143 (-) True XLOC_032997
TCONS_00064119 other upstream 56626 37498146 ~ 37498856 (-) True XLOC_033000
TCONS_00064123 other upstream 173846 37615366 ~ 37615483 (-) True XLOC_033003
TCONS_00064130 other upstream 690991 38132511 ~ 38357713 (-) False XLOC_033006
TCONS_00064131 other upstream 914242 38355762 ~ 38358080 (-) True XLOC_033006

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_08020667_08025048.mRNA True 1289 mRNA 0.44 11 CI01000340 8020455 ~ 8025048 (-)