RNA id: TCONS_00064195


Basic Information

Item Value
RNA id TCONS_00064195
length 615
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_033033
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39874177 ~ 39893526 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACTGTAATTGACCAGCGCTCGGTCTGACGCGTTTCTGCTCCATCCTCAAACACTGCAGTCATGTCTGACTTCACGGAGGACCAGATTTGTGATATGAacatgaagatgctggactttgaGCAGTTTCTGCCAATGCTGCAGGCCATCGCTAAGAACAAGGATCAGGGCTCCTTTGAGGACTTTGTGGAGGGACTGCGGGTCTTTGACAAAGAGGGAAATGGGACGGTGATGGGTGCTGAGTTGCGACATGTCCTCACTACACTAGGTGAGAAGATGACAGAGGAAGAGGTGGAGACGCTCTTAGCAGGACACGAGGACGCTAACGGTTGCATCAATTATGAAGAACTCGTAAGGATGGTCATGAGCGGTTGAAGAATTCAGACACATTGATTTTTGTCCGTTATTTTCCCCCATTCATGTGATTCTTCATTTCCatatttgcttttttaattatttgttctttattttttccttaaGTGCCTTTTATCGTGTTTCTGGAGAATTATGGCTCATTTCATTTCAAAAACGTCAGTTGATCTCCAATTGGGTTTGCTCGAATACCTTCCATTCAGCCATTGCATTCATTCCACCCATCGCTGTACTCGTCCATTATT

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04530 Tight junction
ko04921 Oxytocin signaling pathway
ko04270 Vascular smooth muscle contraction
ko04812 Cytoskeleton proteins
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-041010-28 Predicted to enable calcium ion binding activity. Orthologous to several human genes including MYL6 (myosin light chain 6).

Ensembl:

ensembl_id ENSDART00000141611

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064186 lncRNA downstream 207795 39662076 ~ 39666526 (-) True XLOC_033029
TCONS_00064185 lncRNA downstream 207803 39662015 ~ 39666518 (-) False XLOC_033029
TCONS_00064173 lncRNA downstream 367735 39491846 ~ 39506586 (-) False XLOC_033024
TCONS_00064171 lncRNA downstream 374176 39491846 ~ 39500145 (-) False XLOC_033024
TCONS_00064198 lncRNA upstream 4818 39898319 ~ 39903271 (-) False XLOC_033034
TCONS_00064199 lncRNA upstream 4818 39898319 ~ 39903431 (-) True XLOC_033034
TCONS_00064202 lncRNA upstream 24202 39917703 ~ 39919818 (-) True XLOC_033035
TCONS_00064205 lncRNA upstream 104336 39997837 ~ 40000148 (-) False XLOC_033036
TCONS_00064206 lncRNA upstream 106164 39999665 ~ 40003104 (-) True XLOC_033036
TCONS_00064189 mRNA downstream 108775 39737408 ~ 39765546 (-) False XLOC_033032
TCONS_00064190 mRNA downstream 109326 39739717 ~ 39764995 (-) True XLOC_033032
TCONS_00064188 mRNA downstream 147077 39703232 ~ 39727244 (-) True XLOC_033031
TCONS_00064187 mRNA downstream 173356 39668850 ~ 39700965 (-) True XLOC_033030
TCONS_00064184 mRNA downstream 207599 39661588 ~ 39666722 (-) False XLOC_033029
TCONS_00064197 mRNA upstream 4042 39897543 ~ 39903393 (-) False XLOC_033034
TCONS_00064200 mRNA upstream 20352 39913853 ~ 39919982 (-) False XLOC_033035
TCONS_00064201 mRNA upstream 20352 39913853 ~ 39920105 (-) False XLOC_033035
TCONS_00064203 mRNA upstream 100104 39993605 ~ 40006809 (-) False XLOC_033036
TCONS_00064204 mRNA upstream 100590 39994091 ~ 40029423 (-) False XLOC_033036
TCONS_00064176 other downstream 348816 39524924 ~ 39525505 (-) True XLOC_033025
TCONS_00064162 other downstream 655731 39213261 ~ 39218590 (-) False XLOC_033019
TCONS_00064151 other downstream 805829 39064825 ~ 39068492 (-) False XLOC_033015
TCONS_00064135 other downstream 1276537 38597669 ~ 38597784 (-) True XLOC_033008
TCONS_00064134 other downstream 1447379 38367096 ~ 38426942 (-) True XLOC_033007
TCONS_00064216 other upstream 199736 40093237 ~ 40162742 (-) False XLOC_033042
TCONS_00064217 other upstream 280715 40174216 ~ 40182520 (-) True XLOC_033043
TCONS_00064235 other upstream 679045 40572546 ~ 40573270 (-) False XLOC_033053
TCONS_00064240 other upstream 731803 40625304 ~ 40625420 (-) True XLOC_033055
TCONS_00064243 other upstream 759628 40653129 ~ 40653238 (-) True XLOC_033058

Expression Profile

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