RNA id: TCONS_00065203


Basic Information

Item Value
RNA id TCONS_00065203
length 332
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id XLOC_033042
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40089743 ~ 40162750 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGCGATGTTGATCAACAAATCGGTGTTCTTACCTCGTGGAAAACGCAAGAGAAGCCAAGTCATTTTGTGCTGACTTTTGTGACATTTGTTTGGACTCCAGGATAGGATTACGGTTTCCTTCAACTGCTTAGTCAAACAGTCCCGCTCTACCTGTGAATGGCCTGCATACAGTTTTTTCTGCATATTAAACTTGCATTCAGGAAAAATCCAGACATCAAAAAGactcgaaccccatcgtccCTGTCAACTCTGCTCCACATCACAAGTCCGCCGACATATACAGCGAGCCACTGGATAAAtcggtaacagcggaaaagccgtccacatggag

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0032958 inositol phosphate biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000828 inositol hexakisphosphate kinase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064215 lncRNA downstream 39776 40090627 ~ 40093280 (-) False XLOC_033042
TCONS_00065201 lncRNA downstream 89236 40038692 ~ 40043820 (-) False XLOC_033038
TCONS_00064206 lncRNA downstream 129952 39999665 ~ 40003104 (-) True XLOC_033036
TCONS_00064205 lncRNA downstream 132908 39997837 ~ 40000148 (-) False XLOC_033036
TCONS_00064202 lncRNA downstream 213238 39917703 ~ 39919818 (-) True XLOC_033035
TCONS_00064752 lncRNA upstream 10478 40173228 ~ 40174568 (-) False XLOC_033043
TCONS_00065204 lncRNA upstream 10478 40173228 ~ 40182520 (-) False XLOC_033043
TCONS_00065205 lncRNA upstream 220674 40383424 ~ 40405912 (-) False XLOC_033046
TCONS_00064222 lncRNA upstream 220674 40383424 ~ 40408995 (-) False XLOC_033046
TCONS_00065206 lncRNA upstream 220674 40383424 ~ 40409039 (-) False XLOC_033046
TCONS_00064214 mRNA downstream 34415 40089743 ~ 40098641 (-) False XLOC_033042
TCONS_00064213 mRNA downstream 61157 40065201 ~ 40071899 (-) True XLOC_033041
TCONS_00064210 mRNA downstream 69592 40060409 ~ 40063464 (-) False XLOC_033040
TCONS_00064218 mRNA upstream 21485 40184235 ~ 40312091 (-) False XLOC_033044
TCONS_00064219 mRNA upstream 22914 40185664 ~ 40195510 (-) False XLOC_033044
TCONS_00064220 mRNA upstream 23046 40185796 ~ 40286633 (-) True XLOC_033044
TCONS_00064221 mRNA upstream 166558 40329308 ~ 40352215 (-) True XLOC_033045
TCONS_00064223 mRNA upstream 259474 40422224 ~ 40429411 (-) False XLOC_033047
TCONS_00064176 other downstream 607551 39524924 ~ 39525505 (-) True XLOC_033025
TCONS_00064162 other downstream 914466 39213261 ~ 39218590 (-) False XLOC_033019
TCONS_00064151 other downstream 1064564 39064825 ~ 39068492 (-) False XLOC_033015
TCONS_00064135 other downstream 1535272 38597669 ~ 38597784 (-) True XLOC_033008
TCONS_00064134 other downstream 1706114 38367096 ~ 38426942 (-) True XLOC_033007
TCONS_00064217 other upstream 11466 40174216 ~ 40182520 (-) True XLOC_033043
TCONS_00064235 other upstream 409796 40572546 ~ 40573270 (-) False XLOC_033053
TCONS_00064240 other upstream 462554 40625304 ~ 40625420 (-) True XLOC_033055
TCONS_00064243 other upstream 490379 40653129 ~ 40653238 (-) True XLOC_033058
TCONS_00064244 other upstream 491979 40654729 ~ 40657672 (-) True XLOC_033057

Expression Profile

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