RNA id: TCONS_00065207


Basic Information

Item Value
RNA id TCONS_00065207
length 2097
lncRNA type antisense_over
GC content 0.37
exon number 6
gene id XLOC_033046
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40383424 ~ 40409125 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAGCAGCAGAGAGAAGTTTCCAGGCATCAGATCATCAAGGTAACTAAGCTCCCGTTTGGAAAAACAGAAGTCCAGCAGCTTGCGGATGAACACTAATGCCAGGACCTGCAGGAAATAAACACGCTCATACTGTATTATTCTTATGGTTCTTAAAACACTGCTCCACGTCACTAGGAAACACGATTGCGGCAGGGGAATGTTTAATGACCCAGAGCAGCACAAGGCAGAGATGAGACGCCCATATAAAGAAAAACACCATAGAGAACCGGCATGGGAATGAACTGTGAAACAAAAATAGGGTGCCAGACTCTAATCTAATCATACAAGCAAATGGGTCTAAAACAAGACACGTACAAACGGCACAAAAAGAGGATACTTGTGGATTATGAATGGGAGCAAAATACTTTGAGGACTGAAGAATCACGTTCATCGTTGTAAGTTAAAGAGTTTTCACCTTGTGGGAATGGGAACTTCAGTGAGTCCAGTCAGCAGTACAGCTGGAGACAAGCGAACAAATGCAACGATGGATCTCTCTAAAAAGTCCAGCTCTCCAACCAGCACATTGGAAGCTTCTGCTCCAGTAGGAATCTTTTTCATGAAATGTGTGTCCACCTATGGAGGAAGATGGTCATAGCGGTGTAATTTGCATACTGTTGCAACATTTCGTAAAGGCTGTTACTCTAAAACAACTGCTGAAATGggaagaatattttatttatttattttcaaaatttgaataaattaataataataattaattcacatcacaaaatgcagctgccagagttcttaccagatctagaaaatatgaccatatcaccccaattttatcctccttacactggctgtctgttaagtttcgtattgattataaaatattgcttcttacctacaaagctttaaataatctaactcctgtttatctaaccaaccttggctcactacaatccaacccgctctatAGGATCtaaaaactcagggcttctggtagaaTCCAGGATGGCAAAGTCTACTAAAAGAGGTCaggccttctcatttatggctctaTGGCTGGGACTCGTGGagtgcgcatcgatggatttccTCGTCAGTGTTTGGATTTTCAGCAGTAAAatctaaaccacactgaactgaactaaactgaacttaaactcttaaAACTGGCAAAGTTTCAATTCATTAGaacaatgttaagctgctttgacacaatctacattgtaaaagcgctaaataaataaatgtgaatttaattaatttatgaagGTATAAAAAGCAGAACCACCCAACTATCTGTATCAGGATTCACAGATTTCAATCTGAATAATCAATTATTGGTTTTGACTGAGACTGAGATCTGTAAAAtctatttcagttattttttcttttaagtcATCCAATAGTTATACTTTTTTTCAACCTTATTTTAGTTATAGATGAATAATTAATCTTGTGGTTGTTCTACTTACAAACTCCAGCTGTTCATTTGGGTCAGGGTGACAGTTATAGATAAGACGAACAGCAGGTATGTAATCTGATTGGGGAGTCTCTCTGCCATCTTTACAGCCACTCTAAATGGCTGACATCTGCTTCATTACAGCTAATTTCCTGTTTTGATATGTGGCATAACATTACGCAAACAAGCTGCGGTATCTATACAGACCACCAGGTGGCAGTGCTTGTGTGTACGTGTGAGTGCGTTTGTCCCAGATGTTCTTTGGTAATCGATACTCCAGTGGGCAGGCAGAacacaaacagaaataaacagattAAAGCTGTTTGGTTTAATAGGTTGACATAACACCATCTTTCTTCTCATgtgctttaatatatatatttttatctttctatttcaTAGATTATTTATTCGTCTGCTTCCCCTAAAACAGGatgcattatttgttttattaggcttttaaatgatttttttcattatGATTGTAACCATAAATTTCTCTGTCTGAATTTGCTAAACACATTATGCATtttgatcattcttgagattgTGCCATTTGTAATTCACACAAACCTATGAATGTCTCTTTTGCTATGgttaatttctattttttttaaatgtaaaaaaaataaacttcagTTC

Function

GO:

id name namespace
GO:0006607 NLS-bearing protein import into nucleus biological_process
GO:0090344 negative regulation of cell aging biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0050793 regulation of developmental process biological_process
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065204 lncRNA downstream 200904 40173228 ~ 40182520 (-) False XLOC_033043
TCONS_00064752 lncRNA downstream 208856 40173228 ~ 40174568 (-) False XLOC_033043
TCONS_00065203 lncRNA downstream 220674 40133056 ~ 40162750 (-) True XLOC_033042
TCONS_00065202 lncRNA downstream 220683 40133056 ~ 40162741 (-) False XLOC_033042
TCONS_00064215 lncRNA downstream 290144 40090627 ~ 40093280 (-) False XLOC_033042
TCONS_00064226 lncRNA upstream 23235 40432360 ~ 40434982 (-) False XLOC_033048
TCONS_00064227 lncRNA upstream 23308 40432433 ~ 40434917 (-) True XLOC_033048
TCONS_00065208 lncRNA upstream 68305 40477430 ~ 40482198 (-) True XLOC_033052
TCONS_00064236 lncRNA upstream 163550 40572675 ~ 40573232 (-) False XLOC_033053
TCONS_00065209 lncRNA upstream 216506 40625631 ~ 40629122 (-) False XLOC_033056
TCONS_00064221 mRNA downstream 31209 40329308 ~ 40352215 (-) True XLOC_033045
TCONS_00064218 mRNA downstream 71333 40184235 ~ 40312091 (-) False XLOC_033044
TCONS_00064220 mRNA downstream 96791 40185796 ~ 40286633 (-) True XLOC_033044
TCONS_00064219 mRNA downstream 187914 40185664 ~ 40195510 (-) False XLOC_033044
TCONS_00064214 mRNA downstream 284783 40089743 ~ 40098641 (-) False XLOC_033042
TCONS_00064223 mRNA upstream 13099 40422224 ~ 40429411 (-) False XLOC_033047
TCONS_00064224 mRNA upstream 15941 40425066 ~ 40429414 (-) True XLOC_033047
TCONS_00064225 mRNA upstream 20648 40429773 ~ 40435025 (-) False XLOC_033048
TCONS_00064229 mRNA upstream 30733 40439858 ~ 40448416 (-) False XLOC_033049
TCONS_00064228 mRNA upstream 30733 40439858 ~ 40448416 (-) False XLOC_033049
TCONS_00064217 other downstream 200904 40174216 ~ 40182520 (-) True XLOC_033043
TCONS_00064216 other downstream 220682 40093237 ~ 40162742 (-) False XLOC_033042
TCONS_00064176 other downstream 857919 39524924 ~ 39525505 (-) True XLOC_033025
TCONS_00064162 other downstream 1164834 39213261 ~ 39218590 (-) False XLOC_033019
TCONS_00064151 other downstream 1314932 39064825 ~ 39068492 (-) False XLOC_033015
TCONS_00064235 other upstream 163421 40572546 ~ 40573270 (-) False XLOC_033053
TCONS_00064240 other upstream 216179 40625304 ~ 40625420 (-) True XLOC_033055
TCONS_00064243 other upstream 244004 40653129 ~ 40653238 (-) True XLOC_033058
TCONS_00064244 other upstream 245604 40654729 ~ 40657672 (-) True XLOC_033057
TCONS_00064245 other upstream 246878 40656003 ~ 40656085 (-) True XLOC_033059

Expression Profile

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