RNA id: TCONS_00065208


Basic Information

Item Value
RNA id TCONS_00065208
length 1079
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_033052
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40477430 ~ 40482198 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAAGAGTACAAATATCAGGTTGTATCGGACCCTGAAAGAACACAAGTCTGAGAAGATGAAGATGAATTTGAGGGATGATCAGACTCTTCGCTGTTTGAGGGAATAGCAGCTTTATTGCCTGCAacagatttgtttatttgttcctCCATCAGCTCTTTTTCCATCTGCATTTCATCATACTCTTCCTCGACTGAGGATAAATCAGAGCTGTTCAATCCCTCCTCAATGGTAAGCATCATAATATCTCCATTAATGTTGTCCTTTGTCTCTGTTAATTGAAGAGGCTCCGTTTGTTCAAAGAGGTCACACTCGGAAAGTCCATCTTTGTCTGCTAATGCCTCCCCTGCATCACAAATATCTGGGAACATCACATCAATGTCCTCTTCACTTGAAAACATCCTGTCTGCTACTATACCACTAGGgtaaaatgattcaattaaagttttaccagTGCACATTTTGTCAAAAAGTAATCGATCTGCGTGTGCTAAGCTTTCATAAACTGCATTAGAAGCCAGCTGAACGTTACGAGaacttttatttttaccatttttagtCAGCCCCCATGCTGCCTTCCCCATGTCCTTTACTTGTAGCTCCTCTGCTACTATGTTATAATCTACTTCTTTCTTACTATATAAATCAGAATGAAGGTCAACTGACACTTCATCATCCTCCGACTCCAATGGCTTGTCTTTTTCTAAACCCTCCGCTAAATCTAAATCAACTCCATGTGCTAGCTCATCCCCGCATCCTAACTCATCTCCCTGTTCCAGAATTATTTCCACTTCTGTCTCATCAACTTGTAGTCTTCTTTCTGGATATACTATTTTATTTGTCCTCCTCTCTTGTGACCCCTTATGCTCCACTACAATTTTTCTGTGCACTTTCGGTGTTTGCTCTCTTGAGTTTGGAGAACTTAGACTTTTGCTATTGTGAAGCATGttgaagtacatttttttttgcactgagATGTTTGAATGCTGCTTATGTTTTGGGTTTTTGATGATCCCGACAATCTTCAGGGACAGGTGACTAAGCCTGGAAGTGTCCTCTGAGGCTCGGCGGATGCTCCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064226 lncRNA downstream 42448 40432360 ~ 40434982 (-) False XLOC_033048
TCONS_00064227 lncRNA downstream 42513 40432433 ~ 40434917 (-) True XLOC_033048
TCONS_00065207 lncRNA downstream 68305 40383424 ~ 40409125 (-) True XLOC_033046
TCONS_00065206 lncRNA downstream 68391 40383424 ~ 40409039 (-) False XLOC_033046
TCONS_00064222 lncRNA downstream 68435 40383424 ~ 40408995 (-) False XLOC_033046
TCONS_00064236 lncRNA upstream 90477 40572675 ~ 40573232 (-) False XLOC_033053
TCONS_00065209 lncRNA upstream 143433 40625631 ~ 40629122 (-) False XLOC_033056
TCONS_00065210 lncRNA upstream 143433 40625631 ~ 40629161 (-) True XLOC_033056
TCONS_00065211 lncRNA upstream 171834 40654032 ~ 40659100 (-) False XLOC_033057
TCONS_00065212 lncRNA upstream 177756 40659954 ~ 40661324 (-) True XLOC_033061
TCONS_00064233 mRNA downstream 10569 40456798 ~ 40466861 (-) True XLOC_033051
TCONS_00064232 mRNA downstream 22321 40451270 ~ 40455109 (-) True XLOC_033050
TCONS_00064231 mRNA downstream 28031 40439922 ~ 40449399 (-) True XLOC_033049
TCONS_00064229 mRNA downstream 29014 40439858 ~ 40448416 (-) False XLOC_033049
TCONS_00064228 mRNA downstream 29014 40439858 ~ 40448416 (-) False XLOC_033049
TCONS_00064234 mRNA upstream 90347 40572545 ~ 40573240 (-) False XLOC_033053
TCONS_00064237 mRNA upstream 90710 40572908 ~ 40573221 (-) True XLOC_033053
TCONS_00064238 mRNA upstream 96021 40578219 ~ 40583253 (-) False XLOC_033054
TCONS_00064239 mRNA upstream 96299 40578497 ~ 40581376 (-) True XLOC_033054
TCONS_00064241 mRNA upstream 165590 40647788 ~ 40657653 (-) False XLOC_033057
TCONS_00064217 other downstream 294910 40174216 ~ 40182520 (-) True XLOC_033043
TCONS_00064216 other downstream 314688 40093237 ~ 40162742 (-) False XLOC_033042
TCONS_00064176 other downstream 951925 39524924 ~ 39525505 (-) True XLOC_033025
TCONS_00064162 other downstream 1258840 39213261 ~ 39218590 (-) False XLOC_033019
TCONS_00064151 other downstream 1408938 39064825 ~ 39068492 (-) False XLOC_033015
TCONS_00064235 other upstream 90348 40572546 ~ 40573270 (-) False XLOC_033053
TCONS_00064240 other upstream 143106 40625304 ~ 40625420 (-) True XLOC_033055
TCONS_00064243 other upstream 170931 40653129 ~ 40653238 (-) True XLOC_033058
TCONS_00064244 other upstream 172531 40654729 ~ 40657672 (-) True XLOC_033057
TCONS_00064245 other upstream 173805 40656003 ~ 40656085 (-) True XLOC_033059

Expression Profile

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