RNA id: TCONS_00064236


Basic Information

Item Value
RNA id TCONS_00064236
length 447
lncRNA type retained_intron
GC content 0.44
exon number 2
gene id XLOC_033053
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40572545 ~ 40573270 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATAACCTCGTGGTTTGCCGTAGAAATTCCAAGGTAATATCAAAGACCTTCTGCTTGAATGCTTCGTGTGGCTAAtcctaataatttattataacgTTTAAAAACAATGAGCGGAAAGAAATCGGAAGGGAAATCGGGAGGGGTCACGGGATGGATAAGCTCGGCTTGCCGTTTTGCCGCAGACCGAAATGATTTTAGAAGGAATCTCCTTGTGAACCTGGGCTTGTTTGCTGCGGGTGTTTGGGTCGCGAGAAACCTTTCAGATTTTGACTTGATGTCTCCTCAGCCGGTCACGTAGCTCCACACATTAACAACAAAATGGACTCTTACAGGTGAAATGGCATAATGTTGTTGAAATCATCGTTCACCTCTCATCATGACTTAACTTGGGTTTCTTCTTCTTCAACACAGGTGGTGCTGAAATGGGAGAAGAAAGACGTTTTCTAC

Function

GO:

id name namespace
GO:0005742 mitochondrial outer membrane translocase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-445 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial outer membrane translocase complex. Orthologous to human TOMM6 (translocase of outer mitochondrial membrane 6).

Ensembl:

ensembl_id ENSDART00000154136

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065208 lncRNA downstream 90477 40477430 ~ 40482198 (-) True XLOC_033052
TCONS_00064226 lncRNA downstream 137693 40432360 ~ 40434982 (-) False XLOC_033048
TCONS_00064227 lncRNA downstream 137758 40432433 ~ 40434917 (-) True XLOC_033048
TCONS_00065207 lncRNA downstream 163550 40383424 ~ 40409125 (-) True XLOC_033046
TCONS_00065206 lncRNA downstream 163636 40383424 ~ 40409039 (-) False XLOC_033046
TCONS_00065209 lncRNA upstream 52399 40625631 ~ 40629122 (-) False XLOC_033056
TCONS_00065210 lncRNA upstream 52399 40625631 ~ 40629161 (-) True XLOC_033056
TCONS_00065211 lncRNA upstream 80800 40654032 ~ 40659100 (-) False XLOC_033057
TCONS_00065212 lncRNA upstream 86722 40659954 ~ 40661324 (-) True XLOC_033061
TCONS_00065213 lncRNA upstream 282907 40856139 ~ 40863887 (-) False XLOC_033074
TCONS_00064233 mRNA downstream 105814 40456798 ~ 40466861 (-) True XLOC_033051
TCONS_00064232 mRNA downstream 117566 40451270 ~ 40455109 (-) True XLOC_033050
TCONS_00064231 mRNA downstream 123276 40439922 ~ 40449399 (-) True XLOC_033049
TCONS_00064228 mRNA downstream 124259 40439858 ~ 40448416 (-) False XLOC_033049
TCONS_00064238 mRNA upstream 4987 40578219 ~ 40583253 (-) False XLOC_033054
TCONS_00064239 mRNA upstream 5265 40578497 ~ 40581376 (-) True XLOC_033054
TCONS_00064241 mRNA upstream 74556 40647788 ~ 40657653 (-) False XLOC_033057
TCONS_00064242 mRNA upstream 74563 40647795 ~ 40651944 (-) False XLOC_033057
TCONS_00064248 mRNA upstream 116125 40689357 ~ 40697585 (-) True XLOC_033063
TCONS_00064217 other downstream 390155 40174216 ~ 40182520 (-) True XLOC_033043
TCONS_00064216 other downstream 409933 40093237 ~ 40162742 (-) False XLOC_033042
TCONS_00064176 other downstream 1047170 39524924 ~ 39525505 (-) True XLOC_033025
TCONS_00064162 other downstream 1354085 39213261 ~ 39218590 (-) False XLOC_033019
TCONS_00064151 other downstream 1504183 39064825 ~ 39068492 (-) False XLOC_033015
TCONS_00064240 other upstream 52072 40625304 ~ 40625420 (-) True XLOC_033055
TCONS_00064243 other upstream 79897 40653129 ~ 40653238 (-) True XLOC_033058
TCONS_00064244 other upstream 81497 40654729 ~ 40657672 (-) True XLOC_033057
TCONS_00064245 other upstream 82771 40656003 ~ 40656085 (-) True XLOC_033059
TCONS_00064246 other upstream 82972 40656204 ~ 40656288 (-) True XLOC_033060

Expression Profile

//