RNA id: TCONS_00065209


Basic Information

Item Value
RNA id TCONS_00065209
length 2035
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id XLOC_033056
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40625631 ~ 40629161 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGTCTGTGTCTTTCAGCCGTTTTGTAGCAGTTGAAAAAATGCTGTCAGTCATGCTCTGACCTGATGTGCAACTCTTCCACTAGCCTTCATTGTAATGATAGAGTTGCAGCTTTCTTTTAAAGCTCCTTTGTTTGGAGTGGGGAGATCTGACTGACCAGGTGGATGAGCAAACAACATCGCCTGTCATCAAAGGAGGGCTCATGGAGATTGAAGAAATATTGGTTATTCTTGTCCCTACTGGTCCTGTCCAGCTCTCCATCTCCTTCACCACTGAATCTCCACTAGTCCCACTTAGCTCAACATCTCCTTTGTCCTCTGAATGTACACTTGTCCCAGCACGCTCTCCATCTCAAATTGTCCCCTTAGTCGCCTTCATCAGTCAGCTcgtgtattttaatatatttaaaattgtggAACATTCCAGCAAGTCGGGCACGCAGGAGAGCTGTGgtagaatgctggtgtagttgtagttaaattaaaactgattcagttcagttttgtatATATGTCGCTATTGAAGTtaatttcagtttaattcagGTTAGTCAGGTTAGTAGTTCCTTCTGACTCCGTTAGGCTCCTTCCTCCTTACATCACCTTGGTCCTGACTTGCTCTGGCTCCACCGAGGTCTTCCGGATCCCTGAACTGAGCTGCGTGAGTTATCATCGTTGACTAGGCCCTCCACCACCACTGGCTTCATCTCTGTCAGTTTGGCCCGCTGGAGAGTCtacagctgcgtcccaaatcgcatacttatcgCATACTTATCGCTTAATCGCatacgcacatgttggataactttatttttgatggtgaaagcaaaaaTCTCTTACgaaagtgattatagcgccttctGATGGTGAATGCGCTTATACTCACCGCaggtattatttaattattcggtcgtttatttcactgatttggcaaccgtcaaacgtcatcggagaaacggtttgaatttccacttagtaaaaaaacattagtgtgccatttgggacgacactacatacatatactatcctgttgagtgtgtaagtgcataagtacatagtgcatgagtgcatagtgtatagtgtgccatttgggacgcagcttaccACATTTCCAATATGGCTCCTTCCTCCCTCGAATCCACAGTGGGCTGTCACCTTGGCTGCTCTCTGGTCCCTGCCTGACTACTTCCTTCTAAAAGAAACATAATTCCATGTTTGTATTGAAGATATAAAGATATCACTGTGATCAAgtagtttagttttagtctttGTCCCATGACAATAGGCagcaaattaaatgttttagaCGGTTTAAAAAGGCCTTAGACTTTCTATCACATAATAAAAAAGATATACAGCAATCTACAGGCTCCTGCTTGTTCCGTAAACATTTGAGAAAAGGAGACACATCACCGAGAGCTGTTATCAATTGTTTTTGCTCACTAACAAAAGATGCAGAAGGCCTAAAGTGGTTGTGAGGCTTCCTGCTTTTTGGTTGAAATGTTGGTGGCTGAATGTTTGGATCCAACTAAAACAGATTCTTCCATTTTCTCAATGGGGGGTCCTGAAGAAATAGACAACACGTCTGGTGACGAGGCTCTCGTGTTACAGGATTCTGAAGTATGTTGTTCTGGCTTCCATGACTGTTTTACTGGAGATTGTCCTTGAGAGTTTAAGTTTTTCTAATACTTCACTGTCTATCTGTGACGAGCTCTGTGGGCAGGGCACAGCCGGCATTGTGTCCATGAGCAGTGGTTGTTGTGACTGCATGGTGTTATCATTGTCCTTGTGGGATGTTAACCACATGTCCATTCATGAAGTCCTATGGTCATTCAGAAACTCACCATCTGCGCATGCCAAGTCAAAAGTGGCACACACAGCAGTTGGATAAGGGAGGAAGAAGCATATTGACCTTTAGCACTTTTACATTTCAACAAACAGGAAATGAATATTAAAGAAGTTATATTTAAGACAAAACATTGTGTTCTTTTTGTATTTCACCACTGAAAATATTTCCAAAGGAAATCTTAGCAGAA

Function

GO:

id name namespace
GO:0003146 heart jogging biological_process
GO:0061053 somite development biological_process
GO:0050794 regulation of cellular process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064236 lncRNA downstream 52399 40572675 ~ 40573232 (-) False XLOC_033053
TCONS_00065208 lncRNA downstream 143433 40477430 ~ 40482198 (-) True XLOC_033052
TCONS_00064226 lncRNA downstream 190649 40432360 ~ 40434982 (-) False XLOC_033048
TCONS_00064227 lncRNA downstream 190714 40432433 ~ 40434917 (-) True XLOC_033048
TCONS_00065207 lncRNA downstream 216506 40383424 ~ 40409125 (-) True XLOC_033046
TCONS_00065211 lncRNA upstream 24910 40654032 ~ 40659100 (-) False XLOC_033057
TCONS_00065212 lncRNA upstream 30832 40659954 ~ 40661324 (-) True XLOC_033061
TCONS_00065213 lncRNA upstream 227017 40856139 ~ 40863887 (-) False XLOC_033074
TCONS_00065214 lncRNA upstream 227017 40856139 ~ 40864078 (-) False XLOC_033074
TCONS_00065215 lncRNA upstream 231174 40860296 ~ 40863721 (-) True XLOC_033074
TCONS_00064238 mRNA downstream 42378 40578219 ~ 40583253 (-) False XLOC_033054
TCONS_00064239 mRNA downstream 44255 40578497 ~ 40581376 (-) True XLOC_033054
TCONS_00064234 mRNA downstream 52391 40572545 ~ 40573240 (-) False XLOC_033053
TCONS_00064237 mRNA downstream 52410 40572908 ~ 40573221 (-) True XLOC_033053
TCONS_00064233 mRNA downstream 158770 40456798 ~ 40466861 (-) True XLOC_033051
TCONS_00064241 mRNA upstream 18666 40647788 ~ 40657653 (-) False XLOC_033057
TCONS_00064242 mRNA upstream 18673 40647795 ~ 40651944 (-) False XLOC_033057
TCONS_00064248 mRNA upstream 60235 40689357 ~ 40697585 (-) True XLOC_033063
TCONS_00064249 mRNA upstream 78040 40707162 ~ 40713183 (-) False XLOC_033064
TCONS_00064250 mRNA upstream 78040 40707162 ~ 40713204 (-) False XLOC_033064
TCONS_00064240 other downstream 211 40625304 ~ 40625420 (-) True XLOC_033055
TCONS_00064235 other downstream 52361 40572546 ~ 40573270 (-) False XLOC_033053
TCONS_00064217 other downstream 443111 40174216 ~ 40182520 (-) True XLOC_033043
TCONS_00064216 other downstream 462889 40093237 ~ 40162742 (-) False XLOC_033042
TCONS_00064176 other downstream 1100126 39524924 ~ 39525505 (-) True XLOC_033025
TCONS_00064243 other upstream 24007 40653129 ~ 40653238 (-) True XLOC_033058
TCONS_00064244 other upstream 25607 40654729 ~ 40657672 (-) True XLOC_033057
TCONS_00064245 other upstream 26881 40656003 ~ 40656085 (-) True XLOC_033059
TCONS_00064246 other upstream 27082 40656204 ~ 40656288 (-) True XLOC_033060
TCONS_00064247 other upstream 38225 40667347 ~ 40667463 (-) True XLOC_033062