RNA id: TCONS_00065211


Basic Information

Item Value
RNA id TCONS_00065211
length 2695
lncRNA type sense_over
GC content 0.33
exon number 3
gene id XLOC_033057
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40647788 ~ 40659100 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATAAAAatactgggtttcacacaattccttcacgttatcccaacacaaatctattaatataacttaataattttcacaaatttgagtggattaagcataaaacaattacattgtcCCCCCCAAAATAACCCTAAGAATAGTGCTGGTTcaacccattttaaataagtagtttgaacaagcaactaaagtcatttttgagtgtatactGTAAAAATCGATAACTTAAACAAGTTAGTCAATCTGTTaccttaaaagtgacaagttgattttacttcaAAAATGTAAGTAATGATGCTGTAACTGTAGGgttctctatttttttttatattacacacatagttaatttacttaaaaGTGTTAAGGCaatagatttactcactttttaaagtaaagtcaactaaacagtttttacagtgtagcacagTTATATCCATTAGTTCCTGCATTAACTAAAATCCAGTGAAATGCATTTGTTGCAGCATTTATTATTCTCTTGTTATTAGTTAATAAATATACAACTGTTTACTGTTAGCTAagttacattaaataatatatatatatatatacactgtaaaaaatgatgggtttcagacaattccttcatgttgtctaaacacaaactgattaagtgaacttaattgtttttaaattttaagtggattgaacataaaacaaggaAGTTGTCCCTCCAAAAACtcaaaattgtgttgattcagctcattttaaacaagcagattgaacaagtagcaaaaacagtttttgattgtattattaaaatcaaacattGCATTGGTGTTTGAAATTAACATAACctaaaaataatacacatttttaaaatatttttttaagtatgtaaATCAATGGATGTATCAACTGATGCTAACAATGGAATCTTATTGGAAagtgttaatatatatttttattttaaatttgtatggTCAAATGAGTAAATAACGTTGAGTAAAAATTCAGTTAGGCCTTGTGTTTAATTTCAGCTATTTTCATATTGTGTGTTCATCACCAGGAGgagtttattttcagtgtaaacaaTGCACAGAGTATAATCAGAGGATCTCACAGAGGACATATTTACAACTTACCAAATGCGTTTCAAAACTCTTATCTAATGATGAACAATAGAGAGAGAAAAAGTAAGCCTGAACAGCAAGATAGAGGTTTATTCTTGCCTGTTGCCCTAAAGTCTGACCCAGAACAAGAGACAGCGCAAGTGAGGCGTGGTCTTTTTGAAGGTTAAAAGCTTGTGTACTCAGAAACCCAGAGGCACTTCAACACCAAACCAGCCAATCAAAGAGCACAAGACACACCTACGCATAGAAGCAGGACAGGGATTGGCCACAACGTAAAAATGACACCTGGGCAGGGCTCCAAGGCATCTTCAGACTGGTTTGAGAGGTATGGCCCTGCATGGAAGAAGCAACATTTAACAAGTGGAAGGAGCAGGAAGTGATCTACATCTGCTGAAGCGACACTGCGACACAATGGCATCTCTTGTCCATGACTTCACACTGAACGACTGCAACTGGAACTGAAAGGATGACACCTGAGATCTGTGTGACAAACACTAATTGAACTGCGCCTACACAGTTCGTCTTTCCTGTTCGCTGTGCTGGAGGAGGAAGTAATGCCAGTcggtaaaatattaaaatgactgGTAGACATGCGGCTCTCATGTTAGTGATTTGACACTTATATTACAGGTCTATGTGTTGTCTGATGGAATGTGCAAAgaaaattcacattttaaaagAGATTTGATTTACTTCAAAATGAAAAGTCATTATTTGCTCACTTTCAACTTGATCTCAACCCCATTTgagtttttttgcttttttccaATACATGTTTACGGTCTCATTTTAGTGTAAACTAGCCATTTAAATGATAAAGAAGAAACCGACTGTCAGCTCAtttgaacatttttgttttttatgaataaatatgtgccaccaataaaaatgtttgtttttggaaGATGGAAATAATGTTATTTTCTTCTCGTTAAATAATTTAGGGATGTGTTGGtcgttctgtcatcatttaatcacatACAAACCTACATGACACAAACAAACCCAGcaaccttttttttgttttcagaagaTGTCTGATAGATGCCTTATAGACGTCTAAACATGGTCGTCTtgcctaaaacaaggctaaatttgggctgtttgtcaaaatctaatagatgtccaaTAGATGTCTAAAAGACGTCTAAACAttgttgtcttggctaaaacaaagctaaacttgggctgttagTCTAAATCTAATAGATATCTAATAGATTTCTAATAGTCATCttaacatagtcgtcttggctaaaacaaagctaaatttgggctgttagtctaaatctaatagacgtctaatagatctCTTAACATAGTCGTCTTAGCTAAAACAATGCTACATTTAGTCTGTTAGtcaaaatctaatagatgtctaataaatgtctaatagacgtctaaacatagtcgtcttggctaaaacaaagctaaatttgggctgttggtcaaaatctaatagacgtctaatagatgtctaaacatagtcatcttagCTAAAACAATGCTACATTTAGTCTGTTAGtcaaaatctaatagatgtctaataaatgtctaatagacgtctaaacatagtcgtcttggctaaaacaaagctaaatttggg

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0005634 nucleus cellular_component
GO:0016853 isomerase activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03041 Spliceosome
ko03110 Chaperones and folding catalysts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065210 lncRNA downstream 24871 40625631 ~ 40629161 (-) True XLOC_033056
TCONS_00065209 lncRNA downstream 24910 40625631 ~ 40629122 (-) False XLOC_033056
TCONS_00064236 lncRNA downstream 80800 40572675 ~ 40573232 (-) False XLOC_033053
TCONS_00065208 lncRNA downstream 171834 40477430 ~ 40482198 (-) True XLOC_033052
TCONS_00064226 lncRNA downstream 219050 40432360 ~ 40434982 (-) False XLOC_033048
TCONS_00065212 lncRNA upstream 854 40659954 ~ 40661324 (-) True XLOC_033061
TCONS_00065213 lncRNA upstream 197039 40856139 ~ 40863887 (-) False XLOC_033074
TCONS_00065214 lncRNA upstream 197039 40856139 ~ 40864078 (-) False XLOC_033074
TCONS_00065215 lncRNA upstream 201196 40860296 ~ 40863721 (-) True XLOC_033074
TCONS_00065216 lncRNA upstream 304586 40963686 ~ 40968341 (-) True XLOC_033077
TCONS_00064242 mRNA downstream 2088 40647795 ~ 40651944 (-) False XLOC_033057
TCONS_00064238 mRNA downstream 70779 40578219 ~ 40583253 (-) False XLOC_033054
TCONS_00064239 mRNA downstream 72656 40578497 ~ 40581376 (-) True XLOC_033054
TCONS_00064234 mRNA downstream 80792 40572545 ~ 40573240 (-) False XLOC_033053
TCONS_00064237 mRNA downstream 80811 40572908 ~ 40573221 (-) True XLOC_033053
TCONS_00064248 mRNA upstream 30257 40689357 ~ 40697585 (-) True XLOC_033063
TCONS_00064249 mRNA upstream 48062 40707162 ~ 40713183 (-) False XLOC_033064
TCONS_00064250 mRNA upstream 48062 40707162 ~ 40713204 (-) False XLOC_033064
TCONS_00064251 mRNA upstream 49191 40708291 ~ 40713183 (-) True XLOC_033064
TCONS_00064252 mRNA upstream 56537 40715637 ~ 40722480 (-) False XLOC_033065
TCONS_00064243 other downstream 794 40653129 ~ 40653238 (-) True XLOC_033058
TCONS_00064240 other downstream 28612 40625304 ~ 40625420 (-) True XLOC_033055
TCONS_00064235 other downstream 80762 40572546 ~ 40573270 (-) False XLOC_033053
TCONS_00064217 other downstream 471512 40174216 ~ 40182520 (-) True XLOC_033043
TCONS_00064216 other downstream 491290 40093237 ~ 40162742 (-) False XLOC_033042
TCONS_00064247 other upstream 8247 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064261 other upstream 103657 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064263 other upstream 136798 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064277 other upstream 287257 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064287 other upstream 421197 41080297 ~ 41085447 (-) False XLOC_033082

Expression Profile

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