RNA id: TCONS_00065212


Basic Information

Item Value
RNA id TCONS_00065212
length 625
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id XLOC_033061
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40659954 ~ 40661324 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAAAGTGTCTACAACTAGACAAAAACTTCCAGATATTTGAATGGAGATCAGTGGAGAATTCGGCTTTCTGAGCAGCCATGCGCTCTCTTGAGGAAAACAGGGGGAATGTGATGCAATGACAAGACGCACAATAGAGTGTTTGTGTGCTGGAGAATCCTGGCAACTCCTTCCCTTGGGCCAGTAATCCCTCAGGTACAAGGTATCTCAGGAGGCCTTCCTGACAGCCAGCTGATCCCCATGTTTCTCCATCCTCTCGCCTCACAAATCAGACCCCAGAGATCTCATTAACAATCCACACAGGCTTGTGGATGTGGTGAGGCATTGACCTGTTGCCTGGGTTACAGTGCAGTCCCTGTGTCCCAGCATAAACTCCAGCTGAAGCTGGAAGTCTCAGATCCTTTGTTCTAACTCCATATTCTGAATTGTAATTTTAGAAAAAATAGGCAAAATGTACAGTAAATCTAGATTTTTACTGACTGAACAAGTTAAGCATCAAAATAGCATCAGAAACTagcacagttattttaaacaattattactTTATAGGGATCTTAAATACAAAtagatacaaaaacaaacaaacaaacaataatctTTTAAATCATTCACTAATTTGTAAATTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065211 lncRNA downstream 854 40654032 ~ 40659100 (-) False XLOC_033057
TCONS_00065210 lncRNA downstream 30793 40625631 ~ 40629161 (-) True XLOC_033056
TCONS_00065209 lncRNA downstream 30832 40625631 ~ 40629122 (-) False XLOC_033056
TCONS_00064236 lncRNA downstream 86722 40572675 ~ 40573232 (-) False XLOC_033053
TCONS_00065208 lncRNA downstream 177756 40477430 ~ 40482198 (-) True XLOC_033052
TCONS_00065213 lncRNA upstream 194815 40856139 ~ 40863887 (-) False XLOC_033074
TCONS_00065214 lncRNA upstream 194815 40856139 ~ 40864078 (-) False XLOC_033074
TCONS_00065215 lncRNA upstream 198972 40860296 ~ 40863721 (-) True XLOC_033074
TCONS_00065216 lncRNA upstream 302362 40963686 ~ 40968341 (-) True XLOC_033077
TCONS_00064283 lncRNA upstream 364904 41026228 ~ 41028618 (-) True XLOC_033080
TCONS_00064241 mRNA downstream 2301 40647788 ~ 40657653 (-) False XLOC_033057
TCONS_00064242 mRNA downstream 8010 40647795 ~ 40651944 (-) False XLOC_033057
TCONS_00064238 mRNA downstream 76701 40578219 ~ 40583253 (-) False XLOC_033054
TCONS_00064239 mRNA downstream 78578 40578497 ~ 40581376 (-) True XLOC_033054
TCONS_00064234 mRNA downstream 86714 40572545 ~ 40573240 (-) False XLOC_033053
TCONS_00064248 mRNA upstream 28033 40689357 ~ 40697585 (-) True XLOC_033063
TCONS_00064249 mRNA upstream 45838 40707162 ~ 40713183 (-) False XLOC_033064
TCONS_00064250 mRNA upstream 45838 40707162 ~ 40713204 (-) False XLOC_033064
TCONS_00064251 mRNA upstream 46967 40708291 ~ 40713183 (-) True XLOC_033064
TCONS_00064252 mRNA upstream 54313 40715637 ~ 40722480 (-) False XLOC_033065
TCONS_00064244 other downstream 2282 40654729 ~ 40657672 (-) True XLOC_033057
TCONS_00064246 other downstream 3666 40656204 ~ 40656288 (-) True XLOC_033060
TCONS_00064245 other downstream 3869 40656003 ~ 40656085 (-) True XLOC_033059
TCONS_00064243 other downstream 6716 40653129 ~ 40653238 (-) True XLOC_033058
TCONS_00064240 other downstream 34534 40625304 ~ 40625420 (-) True XLOC_033055
TCONS_00064247 other upstream 6023 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064261 other upstream 101433 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064263 other upstream 134574 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064277 other upstream 285033 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064287 other upstream 418973 41080297 ~ 41085447 (-) False XLOC_033082