RNA id: TCONS_00064260


Basic Information

Item Value
RNA id TCONS_00064260
length 1272
RNA type mRNA
GC content 0.41
exon number 6
gene id XLOC_033067
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40743367 ~ 40778294 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCAGCGGGTACACAGAAATGACGGCGACTCTGCGTCCGTACCTGAATGCGGTGCGTGCTACACTGCAGGCAGCTCTCTGTCTGGAGAACTTCTCCTCACAGGTGGTGGAAAGACACAACAAACCTGAGGTTGAAGTCCGGAGCAGTAAAGAGCTGTTGCTTCAGCCTGTTGTGATCAGTAGGAATGATAAAGAAAAGGTCCTAATAGAAGGTTCCATCAACTCTGTGCGGGTCAGCATTGCTGTCAAACAGGCTGATGAGATCGAAAAGATCCTGTGTCACAAGTTTATGCGCTTCATGATGATGAGAGCCGAGAACTTCTTCATCCTTAGGAGAAAACCTGTGGAGGGATATGACATCAGTTTCCTCATTACCAACTTCCACACAGAACAAATGTACAAGCATAAGTTAGTGGACTTTGTCATCCATTTCATGGAGGAGATCGACAAGGAAATCAGTGAGATGAAACTGTCAGTCAACGCCAGGGCTCGCATAGTTGCAGAGGAGTTCCTCAAAAACTTTTAAGAAACGATCAGCACACCTTCTGCTGGCTGCAATACCCTATCACCGTAAAACACCTACGGAGAGCTTTGGGGCCATTGGGGAAGGAGCTAAGGTGTGTTTGATTCCTGGACCATCACCACAGCTGGATCCAGAAGGGTCACAGGAATGATTTCAGAGTATTGCATTATTGTAACTTGAGAGCAAAGTGACGGATTTAACAGACAGGCACGGTACTCCATTTGTTGTCTGTTCTActccttttttttttgccctgTTTTTTTAACTTTTGCTAATTgcctaatttttttaaagtatttgtttCTTCACATTCAGCAAATTTCTTTGCATTCCGTCTCTTTTCATCTTATCCCACATACCTTCGTTATTAtgcagtagtagcagtagtaaagTGCTTACAACTTTGCAATATTCTGAATATGCCTCAGCGTTCCCTtgtgctcatgaatattaatgagcaggTACTGTACATATTAAAAAGGATAGACTCATTTTACTTCTGCCTTTTTAACTAACTTTAAATCAGGGCGGGTCTATTGGATGAATGCGCATCTATGTTCACGAGCACAAAGGAAATGGTGTTCCAATAATTTAACAGATTATTTTGTCagtgttttttataaatatgtatactgTGTTCTGACGACCATTTTTTCATGTTGAGTTTTGATATAAAAATCCTCACGCTGGTGCACATGGATCTTACAAACCATATCATGATGATGATGCTAAATAAATCCCTTTATTGCT

Function

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0030833 regulation of actin filament polymerization biological_process
GO:0030041 actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005885 Arp2/3 protein complex cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04138 Autophagy - yeast
ko04530 Tight junction
ko04810 Regulation of actin cytoskeleton
ko04666 Fc gamma R-mediated phagocytosis
ko05130 Pathogenic Escherichia coli infection
ko05132 Salmonella infection
ko05131 Shigellosis
ko05135 Yersinia infection
ko05100 Bacterial invasion of epithelial cells
ko04131 Membrane trafficking
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-010724-9 Predicted to enable actin binding activity. Predicted to act upstream of or within Arp2/3 complex-mediated actin nucleation and actin filament polymerization. Predicted to be located in actin cytoskeleton; cell projection; and cytoplasm. Predicted to be part of Arp2/3 protein complex. Orthologous to human ARPC4 (actin related protein 2/3 complex subunit 4).

Ensembl:

ensembl_id ENSDART00000184668

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065212 lncRNA downstream 101105 40659954 ~ 40661324 (-) True XLOC_033061
TCONS_00065211 lncRNA downstream 103329 40654032 ~ 40659100 (-) False XLOC_033057
TCONS_00065210 lncRNA downstream 133268 40625631 ~ 40629161 (-) True XLOC_033056
TCONS_00065209 lncRNA downstream 133307 40625631 ~ 40629122 (-) False XLOC_033056
TCONS_00064236 lncRNA downstream 189197 40572675 ~ 40573232 (-) False XLOC_033053
TCONS_00065213 lncRNA upstream 87485 40856139 ~ 40863887 (-) False XLOC_033074
TCONS_00065214 lncRNA upstream 87485 40856139 ~ 40864078 (-) False XLOC_033074
TCONS_00065215 lncRNA upstream 91642 40860296 ~ 40863721 (-) True XLOC_033074
TCONS_00065216 lncRNA upstream 195032 40963686 ~ 40968341 (-) True XLOC_033077
TCONS_00064283 lncRNA upstream 257574 41026228 ~ 41028618 (-) True XLOC_033080
TCONS_00064258 mRNA downstream 6291 40745667 ~ 40756138 (-) True XLOC_033068
TCONS_00064257 mRNA downstream 6520 40745437 ~ 40755909 (-) False XLOC_033068
TCONS_00064254 mRNA downstream 17703 40730869 ~ 40744726 (-) False XLOC_033066
TCONS_00064255 mRNA downstream 17709 40734100 ~ 40744720 (-) True XLOC_033066
TCONS_00064252 mRNA downstream 39949 40715637 ~ 40722480 (-) False XLOC_033065
TCONS_00064262 mRNA upstream 863 40769517 ~ 40771813 (-) True XLOC_033069
TCONS_00064264 mRNA upstream 53933 40822587 ~ 40832245 (-) True XLOC_033071
TCONS_00064265 mRNA upstream 72502 40841156 ~ 40842768 (-) True XLOC_033072
TCONS_00064266 mRNA upstream 75132 40843786 ~ 40854458 (-) False XLOC_033073
TCONS_00064267 mRNA upstream 75305 40843959 ~ 40851499 (-) True XLOC_033073
TCONS_00064247 other downstream 94966 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064244 other downstream 104757 40654729 ~ 40657672 (-) True XLOC_033057
TCONS_00064246 other downstream 106141 40656204 ~ 40656288 (-) True XLOC_033060
TCONS_00064245 other downstream 106344 40656003 ~ 40656085 (-) True XLOC_033059
TCONS_00064243 other downstream 109191 40653129 ~ 40653238 (-) True XLOC_033058
TCONS_00064263 other upstream 27244 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064277 other upstream 177703 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064287 other upstream 311643 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064312 other upstream 1640803 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064313 other upstream 1641570 42410224 ~ 42415662 (-) False XLOC_033096

Expression Profile

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